View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_30 (Length: 325)
Name: NF10441_low_30
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 34260713 - 34260394
Alignment:
| Q |
1 |
agcagaaagctattattttctcctgacactgtcactaatcacagtgggagtaatgggaagcaattgcatagaaaacaagattcattctcatctatacaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260713 |
agcagaaagctattattttctcctgacactgtcactaatcacggtgggagtaatgggaagcaattgcatagaaaacaagattcattctcatctatacaag |
34260614 |
T |
|
| Q |
101 |
aagaaggaagaggaaaagagaatctattgtttagtaactttttgaaagataaacagtctccagtgaagaaaatatctaaactcatcactcctttaaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260613 |
aagaaggaagaggaaaagagaatctattgtttagtaactttttgaaagataaacagtctccagtgaagaaaatatctaaactcatcactcctttaaagaa |
34260514 |
T |
|
| Q |
201 |
atctccactcaaacatgaatcagctcagaagtccatggatcaattaaagttgcaggtaattacacttatgtgtcggggtc-gacaccgaacacgcctaat |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
34260513 |
atctccactcaaacatgaatcagctcacaagtccatggatcaattaaagttgcaggtaattacacttatgtgtcggggtcggacaccggacacgcctaat |
34260414 |
T |
|
| Q |
300 |
ctaatgagtgtctctgcttc |
319 |
Q |
| |
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||||||||||||| |||||| |
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| T |
34260413 |
ctaatgagtgtctatgcttc |
34260394 |
T |
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