View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_33 (Length: 317)
Name: NF10441_low_33
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 33176906 - 33177185
Alignment:
| Q |
16 |
gaacctgtggtgcataaactgtatatcataatgaaagaaacc-atatcttgaatccagaaaaaactaaatccaatatttttaaaccaaaaattgcaagag |
114 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33176906 |
gaaccagtggtgcataaactgtatattataatgaaagaaacccatatcttgaacccagaaacaactaaatccaatatttttaaaccaaaaattgcaagag |
33177005 |
T |
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| Q |
115 |
aaaattcgtgaagagcccatggtggtgcagaataatagagtcctaaaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagttt |
214 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
33177006 |
aaaattcgtgaagagcccatggcggtgccgaataatagagtcctgaaatcaagctcaagggaacgagatccgccaaggctttaaataacaaataaagttt |
33177105 |
T |
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| Q |
215 |
actagaggatcacaacaatggaaaaacactccgatcagaactccttggatgaaatagtagtgagtagtcaataggaaccc |
294 |
Q |
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| T |
33177106 |
actagaggatcacaacaatggaaaaacactccgattagaactccttggatgaaatagtagtgagtagtcgataggaaccc |
33177185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 160 - 292
Target Start/End: Original strand, 23356790 - 23356923
Alignment:
| Q |
160 |
aaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatg-gaaaaacactccgatcagaactcc |
258 |
Q |
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|||||||||||||| ||| |||| |||| ||||| ||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||| || || |
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| T |
23356790 |
aaaacaagctcaagtgaacgaggaccgcgaaggctctaaatcacaaataaagtttactagaggaccacaacaaggacaaaaacactccgatcagtacccc |
23356889 |
T |
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| Q |
259 |
ttggatgaaatagtagtgagtagtcaataggaac |
292 |
Q |
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| T |
23356890 |
ttggatgaaatagtagtgagaagtctattggaac |
23356923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 23356708 - 23356753
Alignment:
| Q |
60 |
atcttgaatccagaaaaaactaaatccaatatttttaaaccaaaaa |
105 |
Q |
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|||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
23356708 |
atcttgaatctagaaacaaccaaatccaatatttttaaaccaaaaa |
23356753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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