View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10441_low_34 (Length: 313)
Name: NF10441_low_34
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 28 - 296
Target Start/End: Complemental strand, 31902895 - 31902627
Alignment:
| Q |
28 |
atgatcctaagtcctcaaacatcaagcttaaattgatggctataggtagcatgtgttggcttgattagaatgacgttttgtgctgcttaccatttaccta |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
31902895 |
atgatcctaagtcctcaaacatcaagcataaattgatggctatagttagcatgtgttggcttgattagaatgacattttgtgttgcttaccatttaccta |
31902796 |
T |
|
| Q |
128 |
tgattggcttttttatttggtgtatggtattctcgttcgagttgatcgatttaattgcgtaggaaacacataattaatggagagattggtccttgcaacc |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31902795 |
tgattggcttttttatttggtgtatgatattctcggtcgagttgatcgatttaattacgtaggaaacacataattaatggagagattggtccttgcaacc |
31902696 |
T |
|
| Q |
228 |
ttagttcataggcattttgatgtccatggttagttttttggcgcctatggttcagactctgttgatatt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
31902695 |
ttagttcataggcattttgatgtccatggttagttttttagtgcctatggttcagactctgttgatatt |
31902627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University