View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_35 (Length: 311)

Name: NF10441_low_35
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_35
NF10441_low_35
[»] chr3 (3 HSPs)
chr3 (17-300)||(26728394-26728677)
chr3 (16-224)||(8342875-8343083)
chr3 (22-146)||(8342734-8342858)
[»] chr1 (4 HSPs)
chr1 (17-298)||(44612848-44613129)
chr1 (26-275)||(11544099-11544348)
chr1 (38-290)||(35899455-35899707)
chr1 (112-145)||(44145653-44145686)
[»] scaffold0061 (1 HSPs)
scaffold0061 (26-298)||(28856-29128)
[»] scaffold0017 (3 HSPs)
scaffold0017 (26-298)||(169664-169936)
scaffold0017 (98-205)||(174642-174749)
scaffold0017 (230-289)||(180958-181017)
[»] chr5 (1 HSPs)
chr5 (99-277)||(29507188-29507366)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 26728394 - 26728677
Alignment:
Q  17 tcttaatggcaataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728394 tcttaatggcaataagttatgtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtc 26728493  T
Q  117 gtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728494 gtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgt 26728593  T
Q  217 ttcaattaagttatttgcgtctaacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatctg 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728594 ttcaattaagttatttgcgtctaacgtcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatctg 26728677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 8342875 - 8343083
Alignment:
Q  16 atcttaatggcaataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgt 115  Q
    ||||| ||| ||||||  ||| ||||||||||||  | ||||| |||||||||||| | || |||| ||||  |||  |   |||||||||||| |||||    
T  8342875 atctttatgacaataaactaattggagaaatacccacgagcatcggatcacttacgaagttggagaatttgatcctaagcagaaactcttttgatggtgt 8342974  T
Q  116 cgtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccg 215  Q
    |||||||||||| |||||||| ||||||||| |||||  ||| ||| | |||||| | || || |||  ||||||| |||||  |||||||||||||||     
T  8342975 cgtctctgaatctcatttcacaaacctctcaaaattgaaagaactacagttgtctgataacttattgtttgtgaaggttagtactaattgggttcctcct 8343074  T
Q  216 tttcaatta 224  Q
    |||||||||    
T  8343075 tttcaatta 8343083  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 8342734 - 8342858
Alignment:
Q  22 atggcaataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctc 121  Q
    |||| ||||| |||| ||||||||||||  | ||||| || || ||||| || |||||| |||||  |||| |   |||||||||||||||   | ||||    
T  8342734 atggaaataaattaattggagaaatacccacgagcatcgggtcgcttacagagttagaggttttgagcctgcgcagaaactcttttgaaggcaccctctc 8342833  T
Q  122 tgaatcccatttcactaacctctca 146  Q
    |||||||||||||||||||||||||    
T  8342834 tgaatcccatttcactaacctctca 8342858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 44612848 - 44613129
Alignment:
Q  17 tcttaatggcaataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtc 116  Q
    |||||||| |||||| |||| |||||||||||| || ||||| ||||||||||| || ||| ||  |||| ||||||| | |||||||||||||||| ||    
T  44612848 tcttaatgtcaataaattaactggagaaatacccgcgagcatcggatcacttaccgagttacagtatttgtacctgggcggaaactcttttgaaggtatc 44612947  T
Q  117 gtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgt 216  Q
     ||||||||||||||||||||||||||||  |||||| | | ||||| |||||| |||| | ||||| | ||||| ||||| || |||||||||| || |    
T  44612948 atctctgaatcccatttcactaacctctccaaattggaaaaactagacttgtctgacaactcgttgactatgaaggttagtaatgattgggttccccctt 44613047  T
Q  217 ttcaattaagttatttgcgtctaacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatc 298  Q
    ||||||||      ||| |  || ||||||| ||  ||||||||||||||||||||||||| ||||||||||| || |||||    
T  44613048 ttcaattattaacattgggcttatcatcttgtaatatgaattctagatttcctaattggcttcaaacacaaaatgaattatc 44613129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 275
Target Start/End: Complemental strand, 11544348 - 11544099
Alignment:
Q  26 caataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaa 125  Q
    |||||| |||| ||||||||||||  | ||||| ||||||||||| || ||||| |||||| | ||||| | |||||||||||||||  | |||||||||    
T  11544348 caataatttaattggagaaatacccacgagcattggatcacttaccgagttagaaattttgaatctgggcggaaactcttttgaaggcattgtctctgaa 11544249  T
Q  126 tcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaattaa 225  Q
    ||||||||||||||||||||  |||||| ||| |||||||||||| | || ||    | ||||||  ||||||  |||||||||||||| |||||||||     
T  11544248 tcccatttcactaacctctccaaattggaagaactagatttgtctcagaacttaccaactgtgaaagttagtgcaaattgggttcctccttttcaattac 11544149  T
Q  226 gttatttgcgtctaacatcttgcaacctgaattctagatttcctaattgg 275  Q
      ||||||  |||| |||||||||| || ||||| | |||||||||||||    
T  11544148 aatatttgtttctagcatcttgcaatctcaattcaacatttcctaattgg 11544099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 35899455 - 35899707
Alignment:
Q  38 tggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaatcccatttcact 137  Q
    ||||||||||||  | ||||| |||||| ||| ||| ||| ||  ||||||  || | |||||| |||||||||||||| |||||||||| |||||||||    
T  35899455 tggagaaatacccacgagcattggatcaattatggagttaaagtatttggatttgagcgtaaacgcttttgaaggtgtcatctctgaatctcatttcact 35899554  T
Q  138 aacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaattaagttatttgcgtc 237  Q
    ||||||||  |||||| ||| ||| |||||||||| || ||  ||| ||||||| ||||| || | ||||||||||| ||| ||||||   |||||  ||    
T  35899555 aacctctccaaattggaagatctatatttgtcttataactttctgactgtgaaggttagttatgactgggttcctccctttaaattaataaatttgaatc 35899654  T
Q  238 taacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaac 290  Q
    || |||||||||| || |||| |||||||||||| ||||| ||||||||||||    
T  35899655 tagcatcttgcaatctaaattatagatttcctaactggcttcaaacacaaaac 35899707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 44145653 - 44145686
Alignment:
Q  112 gtgtcgtctctgaatcccatttcactaacctctc 145  Q
    ||||||||||||||||||||||||||||||||||    
T  44145653 gtgtcgtctctgaatcccatttcactaacctctc 44145686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 298
Target Start/End: Complemental strand, 29128 - 28856
Alignment:
Q  26 caataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaa 125  Q
    |||||| |||| ||||||||||||  | ||||| ||||||||||| || ||| ||| |||| ||||| |   ||||||||||||||||||||||||||||    
T  29128 caataaattaattggagaaatacccacgagcatcggatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaa 29029  T
Q  126 tcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaattaa 225  Q
    ||||||||||||||||||||  |||||  |   |||   |||||  |||| |  |||| | || || ||||| || ||||||||||||| |||||||||     
T  29028 tcccatttcactaacctctccaaattgaaaaggctatggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattac 28929  T
Q  226 gttatttgcgtctaacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatc 298  Q
       | ||| || || ||  ||| ||  ||||||||| ||||||||||||||||||||||||||| || |||||    
T  28928 tagaattgggtttatcaaattgtaatatgaattctatatttcctaattggctccaaacacaaaatgaattatc 28856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 169664 - 169936
Alignment:
Q  26 caataagttaagtggagaaatacctgcaagcatgggatcacttacggatttagagattttggacctgggagtaaactcttttgaaggtgtcgtctctgaa 125  Q
    |||||| |||| ||||||||||||  | ||||| ||||||||||| || ||| ||| |||| ||||| |   ||||||||||||||||||||||||||||    
T  169664 caataaattaattggagaaatacccacgagcatcggatcacttacagagttaaagagtttgtacctgagccgaaactcttttgaaggtgtcgtctctgaa 169763  T
Q  126 tcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtgataattgggttcctccgtttcaattaa 225  Q
    ||||||||||||||||||||  |||||  |   |||   |||||  |||| |  |||| | || || ||||| || ||||||||||||| |||||||||     
T  169764 tcccatttcactaacctctccaaattgaaaaggctatggttgtccgacaactcattgactatggaggttagtaatgattgggttcctccttttcaattac 169863  T
Q  226 gttatttgcgtctaacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaacgacttatc 298  Q
       | ||| || || ||  ||| ||  ||||||||| ||||||||||||||||||||||||||| || |||||    
T  169864 tagaattgggtttatcaaattgtaatatgaattctatatttcctaattggctccaaacacaaaatgaattatc 169936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 174642 - 174749
Alignment:
Q  98 aaactcttttgaaggtgtcgtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagt 197  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||| |||||| |||||||||||   ||||| ||||||| |||||    
T  174642 aaactcttttgaaggtgttgtctctgaatcgcatttcactaacctctccaaattggtagccctagacttgtcttacaacccgttgactgtgaagcttagt 174741  T
Q  198 gataattg 205  Q
    ||| ||||    
T  174742 gatgattg 174749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 180958 - 181017
Alignment:
Q  230 tttgcgtctaacatcttgcaacctgaattctagatttcctaattggctccaaacacaaaa 289  Q
    |||| ||||||||||||| || |||||||||||||||||| ||||| |  ||||||||||    
T  180958 tttgggtctaacatcttgtaatctgaattctagatttcctgattggtttaaaacacaaaa 181017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 277
Target Start/End: Complemental strand, 29507366 - 29507188
Alignment:
Q  99 aactcttttgaaggtgtcgtctctgaatcccatttcactaacctctcagaattggtagacctagatttgtcttacaatttgttgaatgtgaagattagtg 198  Q
    ||||||||  |||||||| |||||||||| |||||||||||| ||||  ||||  ||| |||| | |||||||  ||  |||||| ||||||| |||||     
T  29507366 aactctttcaaaggtgtcctctctgaatctcatttcactaacttctccaaattactaggcctacagttgtcttctaacctgttgactgtgaaggttagta 29507267  T
Q  199 ataattgggttcctccgtttcaattaagttatttgcgtctaacatcttgcaacctgaattctagatttcctaattggct 277  Q
     | |||||||||| || ||||||||||  ||||||   ||| ||||||| || || || ||||  ||||||||||||||    
T  29507266 ctgattgggttccgccttttcaattaaaatatttgttactagcatcttgtaatctcaactctacctttcctaattggct 29507188  T

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