View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_36 (Length: 308)
Name: NF10441_low_36
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 3182967 - 3183256
Alignment:
| Q |
1 |
gcatgcactttgaagggtgaaataaaaagctatgagttaggctaataagtagtggaactttacctcccccattgaacttgttgacagcattattcaagta |
100 |
Q |
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| T |
3182967 |
gcatgcactttgaagggtgaaataaaaagctatgagttaggctaataggtagtggaactttacctcccccattgaacttgttgacagcattattcaagta |
3183066 |
T |
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| Q |
101 |
tttgaggcaattttcatctttagtttgcattagtgcaaaggcagtggaagatggagaaaataaaaatgatccatcttgagattgtagttttagaagttgt |
200 |
Q |
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| T |
3183067 |
tttgaggcaattttcatctttagtttgcattagtgcaaaggcagtggaagatggagaaaataaaaatgatccatcttgagattgtagttttagaagttgt |
3183166 |
T |
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| Q |
201 |
ttccaatccaagcctaacatcccttccaagctatggagcaaagttgtaggcactttatgcattatctctcttggtattctatcccaacat |
290 |
Q |
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| T |
3183167 |
ttccaatccaagcctaacatcccttccaagctatggagcaaagttgtaggcactttatgcattatctctcttggtattctatcccaacat |
3183256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 3228992 - 3228767
Alignment:
| Q |
57 |
actttacctcccccattgaacttgttgacagcattattcaagtatttgaggcaattttcatctttagtttgcattagtgcaaaggcagtggaagatggag |
156 |
Q |
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|||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
3228992 |
actttaccacccccattgaacttgttgacaattttattcaaatatttgaagcaattttcatctttagtttgcattagtgcaaaggctgtggaagacgtag |
3228893 |
T |
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| Q |
157 |
aaaataaaaatgatccatcttgagattgtagttttagaagttgtttccaatccaagcctaacatcccttccaagctatggagcaaagttgtaggcacttt |
256 |
Q |
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|| || |||||||||||||||||||| | ||||||||||||||||||||||||| || |||| || |||||||||| ||||||||||| || | ||| |
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| T |
3228892 |
aagtcaagaatgatccatcttgagattgcaattttagaagttgtttccaatccaagtctgacattccctccaagctatatagcaaagttgtgggtatttt |
3228793 |
T |
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| Q |
257 |
atgcattatctctcttggtattctat |
282 |
Q |
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| T |
3228792 |
gtgcatcatctctcttggtattctat |
3228767 |
T |
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