View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_38 (Length: 282)
Name: NF10441_low_38
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 39227985 - 39228233
Alignment:
| Q |
17 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
116 |
Q |
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| T |
39227985 |
gacaccaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
39228084 |
T |
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| Q |
117 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39228085 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatccagtgacacaa |
39228184 |
T |
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| Q |
217 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaag |
265 |
Q |
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| T |
39228185 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaag |
39228233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 25547184 - 25547432
Alignment:
| Q |
17 |
gacatcaagagggagtgaacaattgaactcattattgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
116 |
Q |
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|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25547184 |
gacaccaagaggtagtgaacaattgaactcattgttgtaagcatcaagaacttcaagctctttcaaatgagagaatttccaacttagatttccattgaac |
25547283 |
T |
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| Q |
117 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaatattcaagtttgatatatctagtgacacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
25547284 |
atgttgttggatatgttgaggaatctcaagtttgatagttttgtgatggaagatgaaaaagttccagaaacattcaagtttgatatatctagtgacaaaa |
25547383 |
T |
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| Q |
217 |
cagaactattgtttgtgtcacattgaataccataccaagtagtacaaag |
265 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25547384 |
cagaactattgtttgtgtcacattgaatatcataccaagtagtacaaag |
25547432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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