View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_39 (Length: 281)
Name: NF10441_low_39
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 17243313 - 17243560
Alignment:
| Q |
20 |
gtctggaattgtagtatctgattgtgatgtgaaaaatcaattaggttgttatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctaca |
119 |
Q |
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| T |
17243313 |
gtctggaattgtagtatctgattgtgatgtgaaaaatccattaggttgttatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctaca |
17243412 |
T |
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| Q |
120 |
cttaagcatggactcacacctctctcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaacttttagat |
219 |
Q |
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| T |
17243413 |
cttaagcatggactcacacctctctcttggactgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaacttttagat |
17243512 |
T |
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| Q |
220 |
ttggaccacaaatctccaatgttcttgaattggatgttatcacaggtt |
267 |
Q |
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| T |
17243513 |
ttggaccacaaatctccaatgttcttgaattggatgttattacaggtt |
17243560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 17275565 - 17275707
Alignment:
| Q |
69 |
tatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactcacacctctctcttggactgattacttgtatttga |
168 |
Q |
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| T |
17275565 |
tatgttgatgttggaggggaacaactatggattgatgtgttgtatgaaacacttgagtatggacttgcacctgtttcttggactgattatctttacttaa |
17275664 |
T |
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| Q |
169 |
ctgttggtggcactctctctaatgctgggattggtggtcaaac |
211 |
Q |
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| T |
17275665 |
ctattggagggacactctctaatgctggtattagtggacaaac |
17275707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 52454656 - 52454528
Alignment:
| Q |
129 |
ggactcacacctctctcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaacttttagatttggaccac |
228 |
Q |
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| T |
52454656 |
ggacttacaccactttcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttccgatttggtcctc |
52454557 |
T |
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| Q |
229 |
aaatctccaatgttcttgaattggatgtt |
257 |
Q |
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| T |
52454556 |
aaatttccaatgttcatgaattggatgtt |
52454528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 52443404 - 52443489
Alignment:
| Q |
69 |
tatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactcacacctctctcttggactga |
154 |
Q |
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| T |
52443404 |
tatgttgatgttggaggagaacaactatggattgatgttttgtatgcaacacttgaacatggacttgcacctgtttcttggactga |
52443489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 52630637 - 52630570
Alignment:
| Q |
144 |
tcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaac |
211 |
Q |
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| T |
52630637 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaac |
52630570 |
T |
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