View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_4 (Length: 573)
Name: NF10441_low_4
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 140 - 557
Target Start/End: Complemental strand, 37317080 - 37316654
Alignment:
| Q |
140 |
atcaattatcaatgactggggtacaaaggac----aaatagaaggaaaacaccaaaaatgtgcactaattgtagtagaagcaatacccnnnnnnnttgtc |
235 |
Q |
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| T |
37317080 |
atcaattatcaattactggggtacaaaggactaattaatagaaggaaaacaccaaaaatgtgcaccaattgtagtagaagcaatacccaaaaaaattgtc |
37316981 |
T |
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| Q |
236 |
attatttaacttcagaaaatatgtcgccaa---agttagcgtaatatatatccaccacgtttaagttaagtattaattttacgtacaaaaaatgttttaa |
332 |
Q |
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| T |
37316980 |
attatttaacttcagaaaatatgtcgccaaagtagttagcgtaatatatatccaccacgtttaagttaagtattaattttacgtacaaaaaatgttttaa |
37316881 |
T |
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| Q |
333 |
gtgtt--tataactttaaactgtaaaattggatggagtcacgatacgttctatagtatatgatgaggccacaatattacacgtataggtaggtggtctct |
430 |
Q |
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| T |
37316880 |
gtgtttatataactttaaactgcaaaattggatggagtcacgatacgttctatagtatatgatgaggccacaatattacacgtataggtaggtggtctct |
37316781 |
T |
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| Q |
431 |
cgaattctctatcaatttagcttagccaacaattttacttcaaacggaaaaaacattatgataaactggtgtaatttacaagtaattgtttctgtttctc |
530 |
Q |
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| T |
37316780 |
cgaattctctatcaatttagcttagccaacaattttacttcaaacggaaaaaacattatgataaactggtgtaatttacaagtaattgtttctgtttctc |
37316681 |
T |
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| Q |
531 |
tttgagggatcttgttgcccttgaagt |
557 |
Q |
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| T |
37316680 |
tttgagggatcttgttacccttgaagt |
37316654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 37317212 - 37317146
Alignment:
| Q |
14 |
atgaatgaaggtttgatgttttgaagtgattgatccaaaattgatttctatatcaattgattccaat |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317212 |
atgaatgaaggtttgatgttttgaagtgattgatccaaaattgatttctatatcaattgattccaat |
37317146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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