View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_40 (Length: 272)
Name: NF10441_low_40
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 50557817 - 50558073
Alignment:
| Q |
1 |
ggtttttccaccatttctcccaatcatgtgtgtagcatgcagtgattgatatataaccaataggcgcatcaaaccacacatagaaaaccttccaattcaa |
100 |
Q |
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| T |
50557817 |
ggtttttccaccatttctcccaatcatgtgtgtagcatgcggtgattgatatataaccaataggcgcatcaaaccacacatagaaaaccttccaattcaa |
50557916 |
T |
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| Q |
101 |
agaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaaccttattactatatttttcatgtgg |
200 |
Q |
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| T |
50557917 |
agaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaaccttattactatatttttcatgtgg |
50558016 |
T |
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| Q |
201 |
aacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccatctct |
257 |
Q |
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| T |
50558017 |
aacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccatctct |
50558073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29770142 - 29770360
Alignment:
| Q |
1 |
ggtttttccaccatttctcccaatcatgtgtgtagcatgcagtgattgatatataaccaataggcgcatcaaaccacacatagaaaaccttccaattcaa |
100 |
Q |
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| T |
29770142 |
ggtttttccaccatttctcccaatcacgtgtgtagcctgccgtgattgatatatatccaatcggagcatcaaaccaaacatagaacaccttccaatttaa |
29770241 |
T |
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| Q |
101 |
agaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaaccttattactatatttttcatgtgg |
200 |
Q |
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| T |
29770242 |
agaatgtagtt--taaaattagtgaatg-aaaaacaaccgacattttgaaagaccca----aagggaaaa-cttaccttgtcactgtatttttcatgtgg |
29770333 |
T |
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| Q |
201 |
aacaggaaccccccacttcagatctct |
227 |
Q |
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| T |
29770334 |
aacaggaaccccccacttcagatctct |
29770360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 50568052 - 50568219
Alignment:
| Q |
80 |
atagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaacctt |
179 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||| | |||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
50568052 |
atagaaaaccttccaatttaaagaaaatcatttataaaattactgaatg-aaaaataaatgacattttgaaagacc-----aaatggaaaagctaacctt |
50568145 |
T |
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| Q |
180 |
attactatatttttcatgtggaacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccat |
253 |
Q |
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| T |
50568146 |
gttactgcaattttcattcggaacagaaacccgccacttcagatctctggtaatacagcgtcgctctaatccat |
50568219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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