View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_41 (Length: 271)
Name: NF10441_low_41
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 34260844 - 34261093
Alignment:
| Q |
9 |
ttcaatttttcagcatttcttttggaggaaatgtatacagcttcttgatataaaccttgtctgaaattcacaacttgttcttcaagcctaaccacttctt |
108 |
Q |
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| T |
34260844 |
ttcaaattttcagcatttctctttgaggaaatgtaaacagcttcttgatataaaccttgtctgaaattcacaacttgttcttcaagcctaaccacttctt |
34260943 |
T |
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| Q |
109 |
cttccaacactgccacttcagctagaagctccaatgtctacaacaatcacacacattgctttcaatgaatccaaaaatcaacttcaaaaacaaaattcac |
208 |
Q |
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| T |
34260944 |
cctccaacactgccacttcagctagaagctccaatgtctgcaacaatcacacacattgctttcaatgaatccaaaaaccaacttcaaaaataaaattcac |
34261043 |
T |
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| Q |
209 |
tagtactataatt---atacaatacaatgagttgaactcaatgtcagatg |
255 |
Q |
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| T |
34261044 |
tagtactataatttaaatacaatacaatgagctgaactcgttgtcagatg |
34261093 |
T |
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Back To:
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 6565804 - 6565671
Alignment:
| Q |
15 |
ttttcagcatttcttttggaggaaatgtatacagcttcttgatataaaccttgtctgaaattcacaacttgttcttcaagcctaaccacttcttcttcca |
114 |
Q |
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| T |
6565804 |
ttttctgcattcctcttggaggaaatgtacacagcttcctgatataaaccttgtctgaaattcacaaccttctcttctaatcgaaccacctcttcctcca |
6565705 |
T |
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| Q |
115 |
acactgccacttcagctagaagctccaatgtcta |
148 |
Q |
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| T |
6565704 |
ataccgcaacttcagccacaagctctaacgtcta |
6565671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 6229258 - 6229167
Alignment:
| Q |
45 |
acagcttcttgatataaaccttgtctgaaattcacaacttgttcttcaagcctaaccacttcttcttccaacactgccacttcagctagaag |
136 |
Q |
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|||||||| ||||| ||| | || ||||||| |||||||| |||||||||| ||| | ||| |||||||| |||||||||||||||||||| |
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| T |
6229258 |
acagcttcatgatacaaatcctgcctgaaatgcacaactttctcttcaagccaaacaatttcctcttccaaaactgccacttcagctagaag |
6229167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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