View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_42 (Length: 269)
Name: NF10441_low_42
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 2794357 - 2794597
Alignment:
| Q |
29 |
cagagattgatccagaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgaccgagaagtggagaagaggttgctggggta |
128 |
Q |
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| T |
2794357 |
cagagattgatccggaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgacagagaagtggagaagaggttgttggggta |
2794456 |
T |
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| Q |
129 |
ttttgatttgaataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagag |
228 |
Q |
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| T |
2794457 |
ttttgatttgaataagtttagtcttgttaagtttctaatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagag |
2794556 |
T |
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| Q |
229 |
agggataaaattgaggaagagatgaaggggtcgaatttgga |
269 |
Q |
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| T |
2794557 |
agggataaaattgaggaagagatgaaggggtcgaatttgga |
2794597 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 29261933 - 29262049
Alignment:
| Q |
140 |
ataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagagagggataaaat |
239 |
Q |
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| T |
29261933 |
ataagtttagtcttattaagtttttgttgcgaaataggctgaaaattttgtggtgtactcgtttggcgagggcacaagatcaggaagagagagagacgat |
29262032 |
T |
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| Q |
240 |
tgaggaagagatgaagg |
256 |
Q |
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| T |
29262033 |
tgaggaagagatgaagg |
29262049 |
T |
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