View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_43 (Length: 266)

Name: NF10441_low_43
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_43
NF10441_low_43
[»] chr4 (5 HSPs)
chr4 (157-251)||(28039112-28039206)
chr4 (59-107)||(28071023-28071071)
chr4 (59-107)||(50064080-50064128)
chr4 (59-107)||(2035109-2035157)
chr4 (1-37)||(28071102-28071138)
[»] chr6 (4 HSPs)
chr6 (59-149)||(30639492-30639582)
chr6 (62-106)||(3185690-3185734)
chr6 (62-102)||(12188-12228)
chr6 (1-33)||(30641396-30641428)
[»] chr8 (4 HSPs)
chr8 (59-104)||(29669096-29669141)
chr8 (59-106)||(33881076-33881123)
chr8 (62-111)||(7839358-7839406)
chr8 (120-149)||(13958778-13958807)
[»] chr5 (3 HSPs)
chr5 (59-106)||(14434754-14434801)
chr5 (120-156)||(11017142-11017178)
chr5 (7-37)||(14435143-14435173)
[»] chr3 (1 HSPs)
chr3 (62-102)||(9308697-9308737)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 28039206 - 28039112
Alignment:
Q  157 gtatgtttggattgaatgcgagtttgatgaaattggtnnnnnnnncataagcatataattctattgacatgatgttaaccgtgaattgtacgtgc 251  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28039206 gtatgtttggattgaatgcgagtttgatgaaattggtaaaaaaaacataagcatataattctattgacatgatgtgaaccgtgaattgtacgtgc 28039112  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 28071071 - 28071023
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaactc 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28071071 tacttttagatggtttatttgtttattcatatatttatttattaaactc 28071023  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 50064080 - 50064128
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaactc 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50064080 tacttttagatggtttatttgtttattcatatatttatttattaaactc 50064128  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 2035157 - 2035109
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaactc 107  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  2035157 tacttttagatgatttatttgtttattcatatatttatttattaaactc 2035109  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28071138 - 28071102
Alignment:
Q  1 tgaataacacacgtatgcgcagcttcactcttcattc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  28071138 tgaataacacacgtatgcgcagcttcactcttcattc 28071102  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 30639582 - 30639492
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaactcaaacnnnnnnncgtgtgcattcatctcttatttattaagtat 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  30639582 tacttttagatggtttatttgtttattcatatatttatttattaaactcaaacaaaaaaaagtgtgcattcatctcttatttattaagtat 30639492  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 3185734 - 3185690
Alignment:
Q  62 ttttagatggtttatttggttattcatatatttatttattaaact 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  3185734 ttttagatggtttatttgtttattcatatatttatttattaaact 3185690  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 12228 - 12188
Alignment:
Q  62 ttttagatggtttatttggttattcatatatttatttatta 102  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  12228 ttttagatgttttatttgtttattcatatatttatttatta 12188  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30641428 - 30641396
Alignment:
Q  1 tgaataacacacgtatgcgcagcttcactcttc 33  Q
    |||||||||||||||| ||||||||||||||||    
T  30641428 tgaataacacacgtatacgcagcttcactcttc 30641396  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 29669096 - 29669141
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaa 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  29669096 tacttttagatggtttatttgtttattcatatatttatttattaaa 29669141  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 33881076 - 33881123
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaact 106  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  33881076 tacttttagatggtttatttgtttattcatatatttatatattaaact 33881123  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 7839406 - 7839358
Alignment:
Q  62 ttttagatggtttatttggttattcatatatttatttattaaactcaaac 111  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  7839406 ttttagatgattt-tttgtttattcatatatttatttattaaactcaaac 7839358  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 13958778 - 13958807
Alignment:
Q  120 gtgtgcattcatctcttatttattaagtat 149  Q
    ||||||||||||||||||||||||||||||    
T  13958778 gtgtgcattcatctcttatttattaagtat 13958807  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 14434801 - 14434754
Alignment:
Q  59 tacttttagatggtttatttggttattcatatatttatttattaaact 106  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  14434801 tacttttagatggtttatttatttattcatatatttatttattaaact 14434754  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 11017142 - 11017178
Alignment:
Q  120 gtgtgcattcatctcttatttattaagtatcctcgtg 156  Q
    |||||||||||||||||||||||||||||||| ||||    
T  11017142 gtgtgcattcatctcttatttattaagtatccgcgtg 11017178  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 14435173 - 14435143
Alignment:
Q  7 acacacgtatgcgcagcttcactcttcattc 37  Q
    |||||||||||||||||||||||||||||||    
T  14435173 acacacgtatgcgcagcttcactcttcattc 14435143  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 9308737 - 9308697
Alignment:
Q  62 ttttagatggtttatttggttattcatatatttatttatta 102  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  9308737 ttttagatggtttatttgtttatttatatatttatttatta 9308697  T

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