View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_47 (Length: 256)
Name: NF10441_low_47
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 8393010 - 8392802
Alignment:
| Q |
19 |
aattgagtaatagagtttcatctattagaatttaaagacatgaaattttctctaatttatataatatatgtgtaacttgttgcagcataatgataatgag |
118 |
Q |
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| T |
8393010 |
aattgagtaatagagtttcatctattagaatttaaagacatgaaattttctctaatttatataatatatgtgtaacttgttgcagcgtaatgataatgag |
8392911 |
T |
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| Q |
119 |
catgaaataactagacatatgaagacacaattttttattgaaatggaaagcttttctggtggtaacgtgcaagtcctggttattggtaattgttgtgcaa |
218 |
Q |
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| T |
8392910 |
catgaaataactagacgtatgaagacacaattttttattgaaatggaaagcttttccggtggtaacgagcaagtcctggttattggtaattgttgtgcaa |
8392811 |
T |
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| Q |
219 |
tacgctcaa |
227 |
Q |
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||||||||| |
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| T |
8392810 |
tacgctcaa |
8392802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 8408979 - 8409168
Alignment:
| Q |
19 |
aattgagtaatagagtttcatctatta-gaatttaaagacatgaaattttctctaatttatataatatatgtgtaacttgttgcagcata-atgataatg |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||| | ||||||||||||||| | | || |||| |
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| T |
8408979 |
aattgagtaatagagtttcatctattaagaatttaaagacatgaaattttctcttatttttctaatat--gcgtaacttgttgcagcgtccaaga-aatg |
8409075 |
T |
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| Q |
117 |
agcatgaaataactagacatatgaagacacaattttttattgaaatggaaagcttttctggtggtaacgtgcaagtcctggttattggtaatt |
209 |
Q |
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| T |
8409076 |
agtatgaagtaactggacgtataaagacacaatttcttattgaaatggaaggctttgccggtggtaacgagcaagtcctggttattggtaatt |
8409168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 8398179 - 8398005
Alignment:
| Q |
57 |
catgaaattttctctaatttatataatatatgtgtaacttgttgcagc--at----aatgataatgagcatgaaataactagacatatgaagacacaatt |
150 |
Q |
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||||||||||||||| |||||| ||||| |||| |||||||||||| || |||| ||||||||||||| | |||||| ||| |||||||| || |
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| T |
8398179 |
catgaaattttctcttatttatttaatacatgt--aacttgttgcagagaatgtcaaatggtaatgagcatgaagcatctagacgtatcaagacacagtt |
8398082 |
T |
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| Q |
151 |
ttttattgaaatggaaagcttttctggtggtaacgtgcaagtcctggttattggtaattgttgtgcaatacgctcaa |
227 |
Q |
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| T |
8398081 |
tcttattgaaatggaaggctttgacggtggtgacgaccaagtcttggttattggtaattgttgagcaacacactcaa |
8398005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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