View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_48 (Length: 253)
Name: NF10441_low_48
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_48 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 42741308 - 42741546
Alignment:
| Q |
15 |
ataggtaagtaatattgaatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgttta |
114 |
Q |
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| T |
42741308 |
ataggtaagtaatattgaatatgggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgttta |
42741407 |
T |
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| Q |
115 |
agttgtacaatttgaaccataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcct |
214 |
Q |
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| T |
42741408 |
agttgtacaatttgaaccataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcct |
42741507 |
T |
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| Q |
215 |
cgtaacttttatatgctgaccacttactttcgtgacaac |
253 |
Q |
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| T |
42741508 |
cgtaacttttatatgctgaccacttcctttcgtgacaac |
42741546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 21745445 - 21745666
Alignment:
| Q |
32 |
aatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatttgaac |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745445 |
aatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatttgaac |
21745544 |
T |
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| Q |
132 |
cataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgct |
231 |
Q |
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| T |
21745545 |
cataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgct |
21745644 |
T |
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| Q |
232 |
gaccacttactttcgtgacaac |
253 |
Q |
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| T |
21745645 |
gaccacttcctttcgtgacaac |
21745666 |
T |
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