View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_51 (Length: 250)

Name: NF10441_low_51
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_51
NF10441_low_51
[»] chr3 (1 HSPs)
chr3 (1-232)||(26728655-26728886)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-156)||(28721-28876)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-156)||(169916-170071)
scaffold0017 (58-94)||(181063-181099)
[»] chr5 (1 HSPs)
chr5 (177-220)||(29507043-29507086)
[»] chr1 (4 HSPs)
chr1 (177-220)||(44613285-44613328)
chr1 (182-220)||(11543952-11543990)
chr1 (174-220)||(44794954-44795000)
chr1 (27-95)||(44613135-44613203)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26728655 - 26728886
Alignment:
Q  1 ccaaacacaaaacgacttatctgagctttccctttcaaatgtaagtaatttggcgcaaatacctcaatggttttggggaaaattgcaaacactagaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728655 ccaaacacaaaacgacttatctgagctttccctttcaaatgtaggtaatttggcgcaaatacctcaatggttttggggaaaattgcaaacactagaacta 26728754  T
Q  101 ttgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatctaacccattatcttgaactagatttgagttcaaatcaactcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26728755 ttgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatctaacccattatcttgaactagatttgagttcaaatcaactcgaag 26728854  T
Q  201 gttccattccttcttttttacgacaagcccta 232  Q
    ||||||||||||||||||||||||||||||||    
T  26728855 gttccattccttcttttttacgacaagcccta 26728886  T

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Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 28876 - 28721
Alignment:
Q  1 ccaaacacaaaacgacttatctgagctttccctttcaaatgtaagtaatttggcgcaaatacctcaatggttttggggaaaattgcaaacactagaacta 100  Q
    |||||||||||| || |||||    ||||||||||||||||| |||||| |  | | |||||||   ||||||||||||||||||||||||  | |||||    
T  28876 ccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaatacctatttggttttggggaaaattgcaaaca--ataacta 28779  T
Q  101 --ttgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatct 156  Q
      ||| ||||||||||||||||||| | ||| | ||||||  || | |||||||||||    
T  28778 gcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatct 28721  T

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Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 169916 - 170071
Alignment:
Q  1 ccaaacacaaaacgacttatctgagctttccctttcaaatgtaagtaatttggcgcaaatacctcaatggttttggggaaaattgcaaacactagaacta 100  Q
    |||||||||||| || |||||    ||||||||||||||||| |||||| |  | | |||||||   ||||||||||||||||||||||||  | |||||    
T  169916 ccaaacacaaaatgaattatccactctttccctttcaaatgtcagtaatatatctccaatacctatttggttttggggaaaattgcaaaca--ataacta 170013  T
Q  101 --ttgaacatttcaaacaacaatctcagtggtaggattccagatatggaactcaatct 156  Q
      ||| ||||||||||||||||||| | ||| | ||||||  || | |||||||||||    
T  170014 gcttggacatttcaaacaacaatcttactggcatgattcctaatttagaactcaatct 170071  T

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Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 181063 - 181099
Alignment:
Q  58 aatacctcaatggttttggggaaaattgcaaacacta 94  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  181063 aatacctcactggttttgggaaaaattgcaaacacta 181099  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 29507086 - 29507043
Alignment:
Q  177 atttgagttcaaatcaactcgaaggttccattccttctttttta 220  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  29507086 atttgagttcaaatcaacttgaaggttccattccttccttttta 29507043  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 44613285 - 44613328
Alignment:
Q  177 atttgagttcaaatcaactcgaaggttccattccttctttttta 220  Q
    ||||||||||||||||  | ||||||||||||||||||||||||    
T  44613285 atttgagttcaaatcagtttgaaggttccattccttctttttta 44613328  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 11543990 - 11543952
Alignment:
Q  182 agttcaaatcaactcgaaggttccattccttctttttta 220  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  11543990 agttcaaatcaacttgaaggttccattccttctctttta 11543952  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 44795000 - 44794954
Alignment:
Q  174 tagatttgagttcaaatcaactcgaaggttccattccttctttttta 220  Q
    |||||||||||||||||||  | ||||||||||||||||| ||||||    
T  44795000 tagatttgagttcaaatcagtttgaaggttccattccttccttttta 44794954  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 44613135 - 44613203
Alignment:
Q  27 tttccctttcaaatgtaagtaatttggcgcaaatacctcaatggttttggggaaaattgcaaacactag 95  Q
    |||||||||||||||| |||||| |  | | || |||||  ||||||||||| ||||||||||||||||    
T  44613135 tttccctttcaaatgtgagtaatatatctccaacacctctttggttttggggtaaattgcaaacactag 44613203  T

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