View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_52 (Length: 250)
Name: NF10441_low_52
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 50122569 - 50122809
Alignment:
| Q |
1 |
ctctcgcaacatagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtg |
100 |
Q |
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| T |
50122569 |
ctctcgcaacatagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtg |
50122668 |
T |
|
| Q |
101 |
caaatttattcaaatataaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaa |
200 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50122669 |
caaatttattcaaa-attaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaa |
50122767 |
T |
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| Q |
201 |
gcgtaaaagaggaatgtccacgccataaatattgttcttctc |
242 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50122768 |
gcttaaaagaggaatgtccacgccataaatattgttcttctc |
50122809 |
T |
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