View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_53 (Length: 250)
Name: NF10441_low_53
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 48629603 - 48629840
Alignment:
| Q |
1 |
tatgaccttgggatatggttttcaacacaatgatttgagcatctacatgtataacgggaaatgtgnnnnnnnaaacaattagtatttacacttcctaacg |
100 |
Q |
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| T |
48629603 |
tatgaccttgggatatggttttcaacacaatgatttgagcatctacatgtataacgggaaatgtgtttttttaaacaattagtatttacacttcctaatg |
48629702 |
T |
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| Q |
101 |
acatatagactaaaactagttccctacaaataaaataaactaaaactggtttatataacgaggagnnnnnnnaattaaattaaaaagataatattttcta |
200 |
Q |
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| T |
48629703 |
aaatatagactaaaactagttccctacaaataaaataaactaaaactggtttgtataacgaggagtttttttaattaaattaaaaagataatattttcta |
48629802 |
T |
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| Q |
201 |
cttcctatctaaactaaaactcgctaatataatgatgt |
238 |
Q |
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| T |
48629803 |
cttcctatctaaactaaaactcgctaacataatgatgt |
48629840 |
T |
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