View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_56 (Length: 240)
Name: NF10441_low_56
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_56 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 35186747 - 35186524
Alignment:
| Q |
17 |
acaaagttcacacaagtagatgacgtttttcatttcaaagtactatagcctctgttgcaagtttggtactgaaaaatgaaatttgtgtttcaaagtttgt |
116 |
Q |
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| T |
35186747 |
acaaagttcacacaagtagatgatgtttttcatttcaaagtactatagcctctgttgcaagtttggtactgaaaaatgaaatttgtgtttcaaagtttgt |
35186648 |
T |
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| Q |
117 |
ggaaacaagggtaaaaacccccttccaagttccaagtaaatttgttacatatgttgctgccattgttaacttgcttagtcttggtttttagataagttaa |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35186647 |
ggaaacaagggtaaaaccccccttccaagttccaagtaaatttgttacatatgttgctgccattgttaacttgcttagtcttggtttttagataagttaa |
35186548 |
T |
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| Q |
217 |
ttgatttatattgttacatagtgc |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
35186547 |
ttgatttatattgttacatagtgc |
35186524 |
T |
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