View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_57 (Length: 239)

Name: NF10441_low_57
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_57
NF10441_low_57
[»] chr5 (1 HSPs)
chr5 (14-239)||(16697968-16698193)
[»] chr4 (2 HSPs)
chr4 (20-90)||(3346375-3346446)
chr4 (15-74)||(37287357-37287416)
[»] chr2 (1 HSPs)
chr2 (14-89)||(37037582-37037658)
[»] chr8 (4 HSPs)
chr8 (17-89)||(18965880-18965953)
chr8 (19-78)||(18951623-18951682)
chr8 (27-89)||(36167245-36167308)
chr8 (27-89)||(41481246-41481309)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-89)||(342719-342792)
[»] chr7 (7 HSPs)
chr7 (17-89)||(25857632-25857705)
chr7 (17-77)||(24379763-24379823)
chr7 (20-89)||(38994594-38994664)
chr7 (41-89)||(4836067-4836116)
chr7 (14-86)||(27341432-27341504)
chr7 (41-78)||(4843172-4843209)
chr7 (20-72)||(38994548-38994600)
[»] scaffold0479 (1 HSPs)
scaffold0479 (41-89)||(2365-2414)
[»] chr3 (3 HSPs)
chr3 (41-78)||(44783045-44783082)
chr3 (41-89)||(54980365-54980414)
chr3 (14-74)||(39298438-39298498)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 16698193 - 16697968
Alignment:
Q  14 caatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgctattgtcatcacaaatgtttattggccatgtggcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16698193 caatgcatgcaccacaacatgtgtctgtcatacactacaccatatgtacatcatgcaccttgctactgtcatcacaaatgtttattggccatgtggcaat 16698094  T
Q  114 ggccggaccccacagtacatttataaaaaatattctccatcacaaataannnnnnnaaaaataaaatattagtagtttaattttgcagcacaaaactcaa 213  Q
    |||||||||||||| |||||| |||||||||| ||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  16698093 ggccggaccccacaatacattaataaaaaatagtctccattacaaataatttttttaaaaataaaatattagtagtttaattttgcagcacaaaactcaa 16697994  T
Q  214 ttcaatgtcatcacttcgaaagaaac 239  Q
    ||||||||||||||||||||||||||    
T  16697993 ttcaatgtcatcacttcgaaagaaac 16697968  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 3346446 - 3346375
Alignment:
Q  20 atgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcacaa 90  Q
    |||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  3346446 atgcaccacaacatgtgtcactcatacactacaccatatgtacatcatgcaccttgctatttgtcatcacaa 3346375  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 37287357 - 37287416
Alignment:
Q  15 aatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt 74  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||  |||||||||    
T  37287357 aatgcatgcaccacaacatgtgttactcatacactacaccatgtgtacactatgcacctt 37287416  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 37037658 - 37037582
Alignment:
Q  14 caatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  37037658 caatgcatgcaccacaacatgtgttgctcatacactacaccatgtgtacaccatgcaccttactacttgtcatcaca 37037582  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 18965953 - 18965880
Alignment:
Q  17 tgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  18965953 tgcatgcaccaaaacatgtgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 18965880  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 18951623 - 18951682
Alignment:
Q  19 catgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta 78  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||    
T  18951623 catgcaccacaacatgtgtcactcatacactacaccatgtgtacaccatgcatcttgcta 18951682  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 36167308 - 36167245
Alignment:
Q  27 acaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    |||||||||||   ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  36167308 acaacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 36167245  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 41481309 - 41481246
Alignment:
Q  27 acaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    |||||||||||   ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  41481309 acaacatgtgttactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 41481246  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 342719 - 342792
Alignment:
Q  17 tgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||  ||||  ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  342719 tgcatgcaccacaacaaatgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 342792  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 25857632 - 25857705
Alignment:
Q  17 tgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||  ||||  ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  25857632 tgcatgcaccacaacacatgtcactcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 25857705  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 24379763 - 24379823
Alignment:
Q  17 tgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgct 77  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||| |||||| ||||||    
T  24379763 tgcatgcaccacaacatatgtcactcatacactacaccatgtgtacaccatgcatcttgct 24379823  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 38994594 - 38994664
Alignment:
Q  20 atgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||||   |||||||||||  ||||||||| ||||||||||||||| |||||||||||    
T  38994594 atgcaccacaacatgtgttactcatacactacttcatgtgtacttcatgcaccttgctacttgtcatcaca 38994664  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 4836067 - 4836116
Alignment:
Q  41 tcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  4836067 tcatacactacaccatgtgtacaccatgcaccttgctacttgtcatcaca 4836116  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27341432 - 27341504
Alignment:
Q  14 caatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatc 86  Q
    ||||||||||||||||||||| ||   ||||| ||||||||||||||||| ||||| |||||||| ||||||||    
T  27341432 caatgcatgcaccacaacatg-gtaactcatatactacaccatgtgtacaccatgccccttgctacttgtcatc 27341504  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 4843172 - 4843209
Alignment:
Q  41 tcatacactacaccatgtgtacatcatgcaccttgcta 78  Q
    |||||||||||||||||||||||  |||||||||||||    
T  4843172 tcatacactacaccatgtgtacacaatgcaccttgcta 4843209  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 38994548 - 38994600
Alignment:
Q  20 atgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacc 72  Q
    ||||||||||||||||||   |||||||||||| ||||||||||  |||||||    
T  38994548 atgcaccacaacatgtgttactcatacactacatcatgtgtacactatgcacc 38994600  T

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Target: scaffold0479 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 2414 - 2365
Alignment:
Q  41 tcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  2414 tcatacactacaccatgtgtacaccatgcatcttgctacttgtcatcaca 2365  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 44783045 - 44783082
Alignment:
Q  41 tcatacactacaccatgtgtacatcatgcaccttgcta 78  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  44783045 tcatacactacaccatgtgtacaccatgcatcttgcta 44783082  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 54980365 - 54980414
Alignment:
Q  41 tcatacactacaccatgtgtacatcatgcaccttgcta-ttgtcatcaca 89  Q
    ||||||||||||||||||||||| |||||| | ||||| |||||||||||    
T  54980365 tcatacactacaccatgtgtacaccatgcatcctgctacttgtcatcaca 54980414  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 39298498 - 39298438
Alignment:
Q  14 caatgcatgcaccacaacatgtgtctgtcatacactacaccatgtgtacatcatgcacctt 74  Q
    ||||||||||| |||||||| |||   || |||||||||| ||||||||| ||||||||||    
T  39298498 caatgcatgcatcacaacatatgttactcgtacactacactatgtgtacaccatgcacctt 39298438  T

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