View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_58 (Length: 239)
Name: NF10441_low_58
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 40906628 - 40906472
Alignment:
| Q |
66 |
cgctttaattcttaataatgtatcctcaaattcatctgcagtacccannnnnnnnnnnnaattcttattattattacaaacaaacctaagtcccggatac |
165 |
Q |
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| T |
40906628 |
cgctttaattcttaataatgtatcctcaaattcatctgcagtacccattttttctttttaattcttattattattacaaacaaacctaagtcccggatac |
40906529 |
T |
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| Q |
166 |
ttatttaattgaatttcactgtttctatgctaattattattaattgtatgcaggttt |
222 |
Q |
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| T |
40906528 |
ttatttaattgaatttcactgtttctatgctaattattattaattgtatgcaggttt |
40906472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40906706 - 40906656
Alignment:
| Q |
1 |
tcttctaggtatgtttatcatctctttctcttcttcatttcaatttcccaa |
51 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
40906706 |
tcttctaggtatgtttatcaacactttctcttcttcatttcaatttcccaa |
40906656 |
T |
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