View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_61 (Length: 231)

Name: NF10441_low_61
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_61
NF10441_low_61
[»] chr3 (10 HSPs)
chr3 (66-144)||(54883080-54883158)
chr3 (11-50)||(35534497-35534536)
chr3 (11-50)||(36404257-36404296)
chr3 (11-50)||(3618375-3618414)
chr3 (11-50)||(16353524-16353563)
chr3 (11-46)||(29360501-29360536)
chr3 (11-50)||(39391972-39392011)
chr3 (11-50)||(45602999-45603038)
chr3 (11-46)||(46487288-46487323)
chr3 (13-50)||(37115924-37115961)
[»] chr4 (7 HSPs)
chr4 (14-50)||(12701053-12701089)
chr4 (11-50)||(21555395-21555434)
chr4 (12-50)||(53584602-53584640)
chr4 (13-50)||(56100175-56100212)
chr4 (11-50)||(827844-827883)
chr4 (11-50)||(35929722-35929761)
chr4 (14-50)||(44243734-44243770)
[»] scaffold0306 (1 HSPs)
scaffold0306 (11-50)||(13091-13130)
[»] scaffold0152 (1 HSPs)
scaffold0152 (11-50)||(22197-22236)
[»] chr8 (12 HSPs)
chr8 (11-50)||(22798556-22798595)
chr8 (11-50)||(23403613-23403652)
chr8 (11-50)||(30204683-30204722)
chr8 (13-50)||(4234193-4234230)
chr8 (11-46)||(3001412-3001447)
chr8 (11-50)||(4623885-4623924)
chr8 (11-50)||(14842323-14842362)
chr8 (11-50)||(16655993-16656032)
chr8 (11-46)||(36470170-36470205)
chr8 (11-50)||(39436856-39436895)
chr8 (16-50)||(23275567-23275601)
chr8 (16-50)||(29958554-29958588)
[»] chr6 (5 HSPs)
chr6 (11-50)||(444536-444575)
chr6 (11-50)||(2814925-2814964)
chr6 (11-50)||(1067815-1067854)
chr6 (12-50)||(24640388-24640426)
chr6 (13-50)||(26394026-26394063)
[»] chr5 (7 HSPs)
chr5 (11-50)||(3729368-3729407)
chr5 (11-50)||(39508351-39508390)
chr5 (12-50)||(21583864-21583902)
chr5 (13-50)||(21020698-21020735)
chr5 (11-50)||(8159105-8159144)
chr5 (11-50)||(34766919-34766958)
chr5 (11-50)||(2068978-2069015)
[»] chr2 (12 HSPs)
chr2 (11-50)||(21423380-21423419)
chr2 (11-50)||(30609721-30609760)
chr2 (13-50)||(5958981-5959018)
chr2 (13-50)||(37140171-37140208)
chr2 (11-50)||(4382222-4382261)
chr2 (11-50)||(15070425-15070464)
chr2 (11-50)||(24475967-24476006)
chr2 (11-50)||(27404650-27404689)
chr2 (11-50)||(28107523-28107562)
chr2 (11-50)||(37060114-37060153)
chr2 (16-50)||(30393632-30393666)
chr2 (12-50)||(37802872-37802910)
[»] chr1 (6 HSPs)
chr1 (11-50)||(794928-794967)
chr1 (11-50)||(18808793-18808832)
chr1 (11-50)||(41998914-41998953)
chr1 (15-50)||(11121872-11121907)
chr1 (14-48)||(1585877-1585911)
chr1 (16-50)||(39001962-39001996)
[»] scaffold0532 (1 HSPs)
scaffold0532 (12-50)||(11334-11372)
[»] chr7 (1 HSPs)
chr7 (11-50)||(2362417-2362456)
[»] scaffold1248 (1 HSPs)
scaffold1248 (13-50)||(983-1020)
[»] scaffold0952 (1 HSPs)
scaffold0952 (13-50)||(1293-1330)
[»] scaffold0121 (1 HSPs)
scaffold0121 (13-50)||(37440-37477)
[»] scaffold0025 (1 HSPs)
scaffold0025 (14-50)||(67887-67923)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 54883080 - 54883158
Alignment:
Q  66 aaatagtttgtctaaaagtgcatttgtgtcaaagttttaggatccgactccaacttaaacatatcattgatcttttcca 144  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54883080 aaatagtttgtctaaaagtgcatttgtgccaaagttttaggatccgactccaacttaaacatatcattgatcttttcca 54883158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 35534536 - 35534497
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35534536 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 35534497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 36404257 - 36404296
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36404257 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 36404296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 3618375 - 3618414
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  3618375 gtgagaagaaaacttgtatatttcagaaactgaaaacaaa 3618414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 16353524 - 16353563
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  16353524 gtgaaaagaggacttgtatatttcaaaaactgaaaacaaa 16353563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 29360536 - 29360501
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaa 46  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29360536 gtgagaagaggacttgtatatttcaaaaactgaaaa 29360501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 39392011 - 39391972
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  39392011 gtgaaaagaaaacttgtatatttcaaaaactgaaaacaaa 39391972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 45603038 - 45602999
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  45603038 gtgataagatgacttgtatatttcaaaaactgaaaacaaa 45602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 46487323 - 46487288
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaa 46  Q
    ||||||||||||||| ||||||||||||||||||||    
T  46487323 gtgagaagaagacttatatatttcaaaaactgaaaa 46487288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 37115924 - 37115961
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  37115924 gagaagatgacttatatatttcaaaaactgaaaacaaa 37115961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 12701089 - 12701053
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||||||||||||||||||||||||||||||    
T  12701089 agaagaagacttgtatatttcaaaaactgaaaacaaa 12701053  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 21555434 - 21555395
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  21555434 gtgagaagaagacttatatatttcaaaaactgaaaacaaa 21555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 53584602 - 53584640
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  53584602 tgagaagatgacttgtatatttcaaaaactgaaaacaaa 53584640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 56100175 - 56100212
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  56100175 gagaagaggacttgtatatttcaaaaactgaaaacaaa 56100212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 827883 - 827844
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  827883 gtgagaagaggacttgtatatttcaaaaaccgaaaacaaa 827844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 35929761 - 35929722
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  35929761 gtgagaagaggacttatatatttcaaaaactgaaaacaaa 35929722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 44243734 - 44243770
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  44243734 agaagatgacttgtatatttcaaaaactaaaaacaaa 44243770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 13091 - 13130
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  13091 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 13130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 22236 - 22197
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22236 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 22197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 22798595 - 22798556
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22798595 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 22798556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 23403652 - 23403613
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  23403652 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 23403613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 30204683 - 30204722
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  30204683 gtgagaagatgacttgtatatttcaaaaactgaaaacaaa 30204722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 4234230 - 4234193
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4234230 gagaagatgacttgtatatttcaaaaactgaaaacaaa 4234193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 3001412 - 3001447
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaa 46  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3001412 gtgagaagaggacttgtatatttcaaaaactgaaaa 3001447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 4623885 - 4623924
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  4623885 gtgagaagatgacttatatatttcaaaaactgaaaacaaa 4623924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 14842362 - 14842323
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  14842362 gtgaaaagaggacttgtatatttcaaaaactgaaaacaaa 14842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 16656032 - 16655993
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  16656032 gtgagaagaaggcttgtatattttaaaaactgaaaacaaa 16655993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 36470170 - 36470205
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaa 46  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36470170 gtgagaagatgacttgtatatttcaaaaactgaaaa 36470205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 39436895 - 39436856
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  39436895 gtgagaagaggacttgtatatttcaaaaattgaaaacaaa 39436856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 23275567 - 23275601
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  23275567 aagaggacttgtatatttcaaaaactgaaaacaaa 23275601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 29958554 - 29958588
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  29958554 aagatgacttgtatatttcaaaaactgaaaacaaa 29958588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 444575 - 444536
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  444575 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 444536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2814925 - 2814964
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2814925 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 2814964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 1067854 - 1067815
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  1067854 gtgagaagagaacttgtatatttcaaaaactgaaaacaaa 1067815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 24640388 - 24640426
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  24640388 tgagaagaggacttgcatatttcaaaaactgaaaacaaa 24640426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 26394026 - 26394063
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||| || ||||||||||||||||||||||||    
T  26394026 gagaagaagatttttatatttcaaaaactgaaaacaaa 26394063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 3729368 - 3729407
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3729368 gtgagaagaggacttgtatatttcaaaaactgaaaacaaa 3729407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 39508351 - 39508390
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  39508351 gtgagaaaaagacttgtatatttcaaaaactgaaaacaaa 39508390  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 21583902 - 21583864
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  21583902 tgagaagatgacttgtatatttcaaaaactgaaaacaaa 21583864  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 21020735 - 21020698
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  21020735 gagaagaagacttatatatttcaaaaactgaaaacaaa 21020698  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 8159105 - 8159144
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  8159105 gtgagaagaggacttgtatatttcaaaaattgaaaacaaa 8159144  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 34766919 - 34766958
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  34766919 gtgagaagaggacttgtatatttcaaaaattgaaaacaaa 34766958  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 2069015 - 2068978
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  2069015 gtgagaagaagactt--atatttcaaaaactgaaaacaaa 2068978  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 21423419 - 21423380
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  21423419 gtgagatgaagacttgtatatttcaaaaactgaaaacaaa 21423380  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 30609721 - 30609760
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  30609721 gtgagaagaagacttgtatatttcaataactgaaaacaaa 30609760  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 5959018 - 5958981
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  5959018 gagaagaggacttgtatatttcaaaaactgaaaacaaa 5958981  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 37140171 - 37140208
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37140171 gagaagaggacttgtatatttcaaaaactgaaaacaaa 37140208  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 4382261 - 4382222
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  4382261 gtgagaagagaacttgtatatttcaaaaactgaaaacaaa 4382222  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 15070425 - 15070464
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  15070425 gtgagaagaggatttgtatatttcaaaaactgaaaacaaa 15070464  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 24475967 - 24476006
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  24475967 gtgataagaagatttgtatatttcaaaaactgaaaacaaa 24476006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 27404650 - 27404689
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  27404650 gtgagaagaggacttgtatatttcaaaaactaaaaacaaa 27404689  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 28107523 - 28107562
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  28107523 gtgagaagaggatttgtatatttcaaaaactgaaaacaaa 28107562  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 37060114 - 37060153
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  37060114 gtgagaagaggatttgtatatttcaaaaactgaaaacaaa 37060153  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 30393632 - 30393666
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  30393632 aagaggacttgtatatttcaaaaactgaaaacaaa 30393666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 37802872 - 37802910
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  37802872 tgagaagaagacttgtatatttcaaaaatttaaaacaaa 37802910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 794967 - 794928
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  794967 gtgagaagaagacctgtatatttcaaaaactgaaaacaaa 794928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 18808832 - 18808793
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18808832 gtgagaagaagacttgtatatttcataaactgaaaacaaa 18808793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 41998914 - 41998953
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  41998914 gtgagaagaagacttgtatatttcaaaaaatgaaaacaaa 41998953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 11121907 - 11121872
Alignment:
Q  15 gaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11121907 gaagatgacttgtatatttcaaaaactgaaaacaaa 11121872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 1585911 - 1585877
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaaca 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  1585911 agaagaagacttgtatatttcaaaaactaaaaaca 1585877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 39001996 - 39001962
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  39001996 aagaggacttgtatatttcaaaaactgaaaacaaa 39001962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 11372 - 11334
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  11372 tgagaagaggacttgtatatttcaaaaactgaaaacaaa 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2362417 - 2362456
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  2362417 gtgagaagaagatttgtatattttaaaaactgaaaacaaa 2362456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 1020 - 983
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  1020 gagaaaaagacttgtatattttaaaaactgaaaacaaa 983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 1293 - 1330
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  1293 gagaaaaagacttgtatattttaaaaactgaaaacaaa 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 37440 - 37477
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  37440 gagaagaggacttgtatatttcaaaaaccgaaaacaaa 37477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 67923 - 67887
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaa 50  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  67923 agaagaggacttgtatattttaaaaactgaaaacaaa 67887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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