View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_64 (Length: 227)

Name: NF10441_low_64
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_64
NF10441_low_64
[»] chr5 (13 HSPs)
chr5 (116-216)||(30675600-30675701)
chr5 (1-82)||(30711682-30711763)
chr5 (130-211)||(30711758-30711839)
chr5 (65-107)||(30675186-30675228)
chr5 (65-105)||(30062167-30062207)
chr5 (65-103)||(30049582-30049620)
chr5 (169-204)||(30336894-30336929)
chr5 (169-204)||(30485103-30485138)
chr5 (65-109)||(30488148-30488192)
chr5 (65-109)||(30492333-30492377)
chr5 (8-59)||(30659495-30659547)
chr5 (132-211)||(30751347-30751425)
chr5 (65-99)||(30751598-30751632)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 30675600 - 30675701
Alignment:
Q  116 tgaaaatgtgcgtcccacgtgaacgtttgctcacaattattgacca-ccaactttgctgactttctactttcattgcatttattttcaaaagtctccttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  30675600 tgaaaatgtgcgtcccacgtgaacgtttgctcacaattattgaccaccctactttgctgactttctactttcattgcatttattctcaaaggtctccttc 30675699  T
Q  215 at 216  Q
    ||    
T  30675700 at 30675701  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30711682 - 30711763
Alignment:
Q  1 cacatggtcatatgacctgccccatgaagaaaaacatggacctatgccttactttgacaatgttttattctgtcggccacgt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30711682 cacatggtcatatgacctgccccatgaagaaaaacatggacctatgccttactttgacaatgttttattctgtcggccacgt 30711763  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 30711758 - 30711839
Alignment:
Q  130 ccacgtgaacgtttgctcacaattattgaccaccaactttgctgactttctactttcattgcatttattttcaaaagtctcc 211  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  30711758 ccacgtgaacgtttgctcacaattattgaccacctacttttctgactttctactttcattgcatttattttcaaaggtctcc 30711839  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 30675186 - 30675228
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtggatcaatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30675186 ttattctgtcggccacgttttaaaggttaaagtggatcaatca 30675228  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 30062207 - 30062167
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtggatcaat 105  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30062207 ttattctgtcggccacgttttaaaggttaaagtggatcaat 30062167  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 30049620 - 30049582
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtggatca 103  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30049620 ttattctgtcggccacgttttaaaggttaaagtggatca 30049582  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 30336894 - 30336929
Alignment:
Q  169 tgctgactttctactttcattgcatttattttcaaa 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  30336894 tgctgactttctactttcattgcatttattttcaaa 30336929  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 30485138 - 30485103
Alignment:
Q  169 tgctgactttctactttcattgcatttattttcaaa 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  30485138 tgctgactttctactttcattgcatttattttcaaa 30485103  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30488192 - 30488148
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtggatcaatcaaa 109  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||    
T  30488192 ttattttgtcggccacgtattaatggttaaagtggatcaatcaaa 30488148  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30492377 - 30492333
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtggatcaatcaaa 109  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||    
T  30492377 ttattttgtcggccacgtattaatggttaaagtggatcaatcaaa 30492333  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 30659495 - 30659547
Alignment:
Q  8 tcatatgacctgcccc-atgaagaaaaacatggacctatgccttactttgaca 59  Q
    ||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||    
T  30659495 tcatatgacatgcccccatgaagaaaaacatggaccaatgtcttactttgaca 30659547  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 30751425 - 30751347
Alignment:
Q  132 acgtgaacgtttgctcacaattattgaccaccaactttgctgactttctactttcattgcatttattttcaaaagtctcc 211  Q
    ||||||| ||||||||||||||||||| |||| || ||||||| || |||||  |||||| |||||| ||||| ||||||    
T  30751425 acgtgaatgtttgctcacaattattgaacacctac-ttgctgagttcctactaccattgcttttattctcaaaggtctcc 30751347  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 30751632 - 30751598
Alignment:
Q  65 ttattctgtcggccacgttttaaaggttaaagtgg 99  Q
    ||||||||||||||||||||||| |||||||||||    
T  30751632 ttattctgtcggccacgttttaatggttaaagtgg 30751598  T

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