View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_65 (Length: 226)

Name: NF10441_low_65
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_65
NF10441_low_65
[»] chr1 (27 HSPs)
chr1 (1-178)||(46543263-46543438)
chr1 (1-110)||(50328027-50328137)
chr1 (1-109)||(32914959-32915068)
chr1 (1-109)||(40316831-40316940)
chr1 (1-112)||(50781454-50781566)
chr1 (1-108)||(52362557-52362665)
chr1 (51-109)||(36577299-36577357)
chr1 (51-109)||(50881997-50882055)
chr1 (53-99)||(51571243-51571289)
chr1 (1-108)||(13489737-13489845)
chr1 (1-108)||(15704950-15705058)
chr1 (52-108)||(35136971-35137027)
chr1 (1-108)||(48326043-48326150)
chr1 (1-99)||(52714798-52714897)
chr1 (1-38)||(3226019-3226056)
chr1 (52-109)||(29154905-29154962)
chr1 (52-108)||(10889934-10889990)
chr1 (52-99)||(7101584-7101631)
chr1 (74-113)||(19969457-19969496)
chr1 (52-99)||(33358055-33358102)
chr1 (1-42)||(8447811-8447852)
chr1 (1-42)||(15015473-15015514)
chr1 (1-38)||(29147833-29147870)
chr1 (52-108)||(8200202-8200258)
chr1 (62-98)||(34040396-34040432)
chr1 (52-108)||(34254239-34254295)
chr1 (1-37)||(51466842-51466878)
[»] chr5 (27 HSPs)
chr5 (1-114)||(189585-189699)
chr5 (51-108)||(32912164-32912221)
chr5 (1-108)||(15478733-15478841)
chr5 (52-108)||(8675321-8675377)
chr5 (1-109)||(10658991-10659099)
chr5 (52-109)||(10649562-10649619)
chr5 (52-108)||(34270454-34270510)
chr5 (52-112)||(43441865-43441925)
chr5 (64-114)||(189516-189566)
chr5 (1-109)||(19481069-19481178)
chr5 (52-109)||(41175593-41175650)
chr5 (3-39)||(15008508-15008544)
chr5 (52-99)||(6446415-6446462)
chr5 (52-99)||(15952942-15952989)
chr5 (1-99)||(19839883-19839982)
chr5 (52-99)||(38704094-38704141)
chr5 (1-39)||(1839303-1839341)
chr5 (53-99)||(21353272-21353318)
chr5 (1-42)||(6517787-6517828)
chr5 (1-37)||(6292196-6292232)
chr5 (52-99)||(9226427-9226475)
chr5 (1-37)||(9581654-9581690)
chr5 (1-37)||(30640865-30640901)
chr5 (52-108)||(34124748-34124804)
chr5 (1-37)||(34888769-34888805)
chr5 (1-37)||(43214019-43214055)
chr5 (1-37)||(43441813-43441849)
[»] chr6 (14 HSPs)
chr6 (1-109)||(35213448-35213557)
chr6 (1-99)||(20822766-20822864)
chr6 (1-109)||(754325-754434)
chr6 (52-108)||(13143270-13143326)
chr6 (52-99)||(1369487-1369534)
chr6 (52-111)||(18141186-18141245)
chr6 (51-99)||(32046824-32046872)
chr6 (53-99)||(31883200-31883246)
chr6 (1-109)||(32459403-32459512)
chr6 (52-108)||(3832590-3832646)
chr6 (1-37)||(26832721-26832757)
chr6 (57-99)||(6856060-6856102)
chr6 (52-109)||(6531067-6531124)
chr6 (1-37)||(868912-868948)
[»] chr3 (22 HSPs)
chr3 (1-108)||(46852020-46852128)
chr3 (5-109)||(3953362-3953467)
chr3 (1-110)||(21005062-21005172)
chr3 (52-109)||(51465801-51465858)
chr3 (1-109)||(55400074-55400183)
chr3 (1-99)||(46019537-46019636)
chr3 (52-109)||(6999297-6999354)
chr3 (1-109)||(24482850-24482959)
chr3 (1-42)||(50206925-50206966)
chr3 (56-99)||(14771493-14771536)
chr3 (52-99)||(21196251-21196298)
chr3 (1-99)||(39697119-39697218)
chr3 (52-99)||(52937310-52937357)
chr3 (52-110)||(18741243-18741301)
chr3 (52-106)||(26645153-26645207)
chr3 (53-99)||(9719345-9719391)
chr3 (1-97)||(20080147-20080245)
chr3 (1-30)||(24645431-24645460)
chr3 (52-108)||(36412250-36412307)
chr3 (1-42)||(46253697-46253738)
chr3 (52-108)||(24095294-24095350)
chr3 (1-37)||(37927165-37927201)
[»] chr7 (29 HSPs)
chr7 (1-114)||(43573425-43573539)
chr7 (1-112)||(28036819-28036931)
chr7 (52-109)||(11352861-11352918)
chr7 (1-108)||(33180598-33180706)
chr7 (52-116)||(44184439-44184503)
chr7 (1-39)||(40231664-40231702)
chr7 (52-108)||(41894042-41894098)
chr7 (51-99)||(42555690-42555738)
chr7 (1-99)||(1504257-1504356)
chr7 (52-110)||(7817763-7817821)
chr7 (1-110)||(12645796-12645906)
chr7 (52-97)||(16980423-16980468)
chr7 (52-108)||(13729853-13729909)
chr7 (1-37)||(31844565-31844601)
chr7 (51-118)||(34757348-34757416)
chr7 (1-37)||(43482598-43482634)
chr7 (1-99)||(46532577-46532677)
chr7 (1-99)||(10055529-10055628)
chr7 (53-99)||(10700083-10700129)
chr7 (53-99)||(49069372-49069418)
chr7 (1-30)||(4225827-4225856)
chr7 (1-30)||(6109938-6109967)
chr7 (1-30)||(41399130-41399159)
chr7 (1-37)||(3062405-3062441)
chr7 (1-37)||(20482602-20482638)
chr7 (1-37)||(25067298-25067334)
chr7 (53-97)||(36533856-36533900)
chr7 (74-110)||(41458745-41458781)
chr7 (1-37)||(44184519-44184555)
[»] chr4 (30 HSPs)
chr4 (52-114)||(22819776-22819838)
chr4 (52-109)||(17683468-17683525)
chr4 (52-99)||(26718495-26718542)
chr4 (52-99)||(26731123-26731170)
chr4 (52-109)||(31657773-31657830)
chr4 (1-109)||(39344867-39344976)
chr4 (52-108)||(47099147-47099203)
chr4 (52-99)||(18882872-18882919)
chr4 (52-99)||(45143570-45143617)
chr4 (52-99)||(45152339-45152386)
chr4 (52-99)||(52846126-52846173)
chr4 (1-110)||(14010004-14010114)
chr4 (51-109)||(38338809-38338867)
chr4 (53-99)||(42491202-42491248)
chr4 (53-99)||(50831652-50831698)
chr4 (52-112)||(12799841-12799901)
chr4 (56-99)||(12595527-12595570)
chr4 (52-99)||(46405871-46405918)
chr4 (52-110)||(2999239-2999297)
chr4 (53-110)||(40609742-40609800)
chr4 (3-99)||(13139225-13139321)
chr4 (1-37)||(2313281-2313317)
chr4 (1-37)||(7628104-7628139)
chr4 (1-37)||(18882935-18882971)
chr4 (1-37)||(21617258-21617294)
chr4 (71-99)||(32696685-32696713)
chr4 (1-37)||(33860721-33860757)
chr4 (1-37)||(51573592-51573628)
chr4 (1-37)||(51852151-51852187)
chr4 (1-37)||(51887738-51887774)
[»] chr2 (28 HSPs)
chr2 (52-109)||(32869953-32870010)
chr2 (1-99)||(2563779-2563878)
chr2 (52-99)||(13347711-13347758)
chr2 (1-109)||(6170705-6170814)
chr2 (52-109)||(13765527-13765584)
chr2 (1-108)||(35589275-35589383)
chr2 (52-108)||(36643972-36644028)
chr2 (3-109)||(24562904-24563011)
chr2 (1-109)||(6998955-6999064)
chr2 (52-109)||(23352794-23352851)
chr2 (53-109)||(3012739-3012795)
chr2 (52-99)||(4023247-4023294)
chr2 (52-99)||(7574562-7574609)
chr2 (51-112)||(36211944-36212005)
chr2 (1-99)||(9377531-9377630)
chr2 (1-99)||(9634333-9634432)
chr2 (52-99)||(36517323-36517370)
chr2 (52-99)||(37105765-37105812)
chr2 (1-99)||(39449342-39449441)
chr2 (53-99)||(7258458-7258504)
chr2 (1-99)||(28245803-28245901)
chr2 (52-98)||(34119550-34119596)
chr2 (1-37)||(4061922-4061958)
chr2 (1-37)||(7648465-7648501)
chr2 (52-108)||(10711851-10711907)
chr2 (1-37)||(30546330-30546366)
chr2 (52-108)||(39213658-39213714)
chr2 (52-116)||(41586548-41586612)
[»] chr8 (18 HSPs)
chr8 (51-110)||(42569615-42569674)
chr8 (1-99)||(16872053-16872152)
chr8 (1-108)||(31597023-31597131)
chr8 (52-114)||(12707277-12707339)
chr8 (51-97)||(41541983-41542029)
chr8 (52-109)||(36885375-36885432)
chr8 (1-37)||(12783840-12783876)
chr8 (52-99)||(36568088-36568135)
chr8 (52-99)||(43397700-43397747)
chr8 (51-108)||(2733113-2733171)
chr8 (1-39)||(28646747-28646785)
chr8 (1-39)||(28651331-28651369)
chr8 (51-97)||(41701292-41701338)
chr8 (63-99)||(10592206-10592242)
chr8 (52-108)||(30439394-30439450)
chr8 (52-108)||(34018935-34018991)
chr8 (1-37)||(36424562-36424598)
chr8 (1-37)||(41159849-41159885)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-109)||(12007-12116)
[»] scaffold0532 (2 HSPs)
scaffold0532 (52-109)||(11091-11148)
scaffold0532 (1-37)||(11039-11075)
[»] scaffold0136 (1 HSPs)
scaffold0136 (52-109)||(38552-38609)
[»] scaffold1956 (1 HSPs)
scaffold1956 (1-39)||(845-883)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-42)||(8289-8330)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 46543438 - 46543263
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatag 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||         |||||||| ||||||||||||||| |||||||||||||||||||||||     
T  46543438 actttatctctctattgctttggttttcgtgcaaatatcaacttttttttttaaattataattgtcccaaaaattatcaaccaaatggttgttcaaataa 46543339  T
Q  101 tactcctctattataagtgaaaaagagaacaaatnnnnnnnncaacactgccaggcctcgtgaaaaagcactgacttc 178  Q
     |||||||||| | |||||  |||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  46543338 cactcctctatcacaagtg--aaagagaacaaataaaaaaaacaacactgccaggcctcgtgaaaaagcactgacttc 46543263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 50328137 - 50328027
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  50328137 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaata 50328038  T
Q  100 gtactcctcta 110  Q
      |||||||||    
T  50328037 acactcctcta 50328027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32915068 - 32914959
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||| |||||| ||||          |||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  32915068 actttatctctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatgattgttccaaaagttgtcaaccaaatagttgttcaaata 32914969  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  32914968 acactcctct 32914959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 40316940 - 40316831
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||         |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  40316940 actttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 40316841  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  40316840 acactcctct 40316831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 50781566 - 50781454
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||          ||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  50781566 actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatgattgtcctaaaagttgtctaccaaatggttgttcaaata 50781467  T
Q  100 gtactcctctatt 112  Q
      |||||||||||    
T  50781466 acactcctctatt 50781454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 52362557 - 52362665
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||         |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  52362557 actttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 52362656  T
Q  100 gtactcctc 108  Q
      |||||||    
T  52362657 acactcctc 52362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 36577357 - 36577299
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  36577357 ataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctct 36577299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 50882055 - 50881997
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||  ||||||||    
T  50882055 ataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacactcctct 50881997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 51571289 - 51571243
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  51571289 aaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaata 51571243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13489737 - 13489845
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||||||| || ||||||||||||| ||||||||||||    
T  13489737 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccagaagttgtcaaccaaatagttgttcaaata 13489836  T
Q  100 gtactcctc 108  Q
      |||||||    
T  13489837 acactcctc 13489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15705058 - 15704950
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||  |||||||||||||||||||| |||||| ||||         |||||||||| |||||| |||| || |||||||||||||||||||||||    
T  15705058 actttatcattctattgttttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttatcaaccaaatggttgttcaaata 15704959  T
Q  100 gtactcctc 108  Q
      |||||||    
T  15704958 acactcctc 15704950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 35136971 - 35137027
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||  |||||||    
T  35136971 taaattatggttgtcctaaaaattgtcaaccaaatgattgttcaaataacactcctc 35137027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 48326043 - 48326150
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||| |||||||||||||| ||||          ||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  48326043 actttatctctctattgctttgattttcgtacaaataccaactttttctttgtaaattatggttgtcc-aaaagttgtcaaccaaatggttgttcaaata 48326141  T
Q  100 gtactcctc 108  Q
      |||||||    
T  48326142 acactcctc 48326150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 52714897 - 52714798
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||| ||| || ||||          ||||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  52714897 actttatctctctattgttttggttttcgtgcaattaccaactttttctttgtaaattattgttgtcccaaaagttgtcaatcaaatggttgttcaaata 52714798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3226056 - 3226019
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatat 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  3226056 actttatctctctattgctttggttttcgtacaaatat 3226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 29154905 - 29154962
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||  |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  29154905 taaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 29154962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 10889990 - 10889934
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||| ||||| ||||||||||||| ||||||||||||  |||||||    
T  10889990 taaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctc 10889934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 7101631 - 7101584
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  7101631 taaattatgattgtctctaaagttgtcaatcaaatggttgttcaaata 7101584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 19969496 - 19969457
Alignment:
Q  74 ttgtcaaccaaatggttgttcaaatagtactcctctatta 113  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  19969496 ttgtcaaccaaatggttgttcaaataacactcctctatta 19969457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 33358102 - 33358055
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||    
T  33358102 taaattatggttgtcacataagttgtcaaccaaatggttgttcaaata 33358055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8447811 - 8447852
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  8447811 actttatctctctattgttttagtttttgtgcaaatatcaac 8447852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15015473 - 15015514
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    ||||||| |||||||||||||||||||||| |||||| ||||    
T  15015473 actttatatctctattgttttggttttcgtgcaaataccaac 15015514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29147870 - 29147833
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatat 38  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  29147870 actttatctctctattgttttggtttccgtgcaaatat 29147833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 8200202 - 8200258
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||||| || |||||||||||| || ||||||||||  |||||||    
T  8200202 taaattatggttgtcccataagttgtcaaccaaaaggctgttcaaataacactcctc 8200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 34040432 - 34040396
Alignment:
Q  62 ttgtcccaaaaattgtcaaccaaatggttgttcaaat 98  Q
    |||||||||||||| |||| |||||||||||||||||    
T  34040432 ttgtcccaaaaattatcaatcaaatggttgttcaaat 34040396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 34254295 - 34254239
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||  ||||||||||| || ||||||||||| |||||||||||  |||||||    
T  34254295 taaattatagttgtcccaaaagttatcaaccaaatgattgttcaaataacactcctc 34254239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51466842 - 51466878
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  51466842 actttatctctctattgttttgatttccgtacaaata 51466878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 189699 - 189585
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||||||||         |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  189699 actttatctctctattgctttggttttcgtgcaaatatcaactttttctttataaattatgattgtcccaaaagttgtcaaccaaatgattgttcaaata 189600  T
Q  100 gtactcctctattat 114  Q
      |||||||| ||||    
T  189599 acactcctcttttat 189585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 32912164 - 32912221
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  32912164 ataaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 32912221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15478733 - 15478841
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||| ||||||||||||||||| |||||||||||          ||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  15478733 actttatctctcaattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgttccaaaaattgtcaaccaaatagttgttcaaata 15478832  T
Q  100 gtactcctc 108  Q
      |||||||    
T  15478833 acactcctc 15478841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 8675377 - 8675321
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  8675377 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 8675321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 10659099 - 10658991
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatag 100  Q
    ||||||||||||||||| |||||||||||| |||||||| |         |||||||| | |||| |||||| ||||||| ||||||||||||||||||     
T  10659099 actttatctctctattgctttggttttcgtgcaaatatctatttttctttataaattacggttgtgccaaaagttgtcaatcaaatggttgttcaaataa 10659000  T
Q  101 tactcctct 109  Q
     ||||||||    
T  10658999 cactcctct 10658991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 10649562 - 10649619
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  10649562 taaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctct 10649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 34270454 - 34270510
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||  |||||||    
T  34270454 taaattatggttgtctcaaaatttgtcaaccaaatggttgttcaaataacactcctc 34270510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 43441865 - 43441925
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctatt 112  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||  |||||||||||    
T  43441865 taaattatggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcctctatt 43441925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 189566 - 189516
Alignment:
Q  64 gtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattat 114  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||||    
T  189566 gtcccaaaaattgtcaaccaaatgattgttcaaataacactcctcttttat 189516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19481178 - 19481069
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||| ||||| |||||| ||||          ||||||||  ||||||||||| || ||||||||||| |||||||||||    
T  19481178 actttatctctctattgttttggtcttcgtgcaaataccaactttttctttgtaaattatagttgtcccaaaagttatcaaccaaatgattgttcaaata 19481079  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  19481078 acactcctct 19481069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 41175650 - 41175593
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||  ||||||||    
T  41175650 taaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctct 41175593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 15008544 - 15008508
Alignment:
Q  3 tttatctctctattgttttggttttcgtacaaatatc 39  Q
    |||||||||||||||||||||||||||| ||||||||    
T  15008544 tttatctctctattgttttggttttcgtgcaaatatc 15008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 6446462 - 6446415
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| |||| | |||||||||||||||||| ||||||||||||    
T  6446462 taaattatggttgttcaaaaaattgtcaaccaaattgttgttcaaata 6446415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 15952989 - 15952942
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||    
T  15952989 taaattatggttgtcacataagttgtcaaccaaatggttgttcaaata 15952942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19839982 - 19839883
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaa-cnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||| ||||||||| |||||||||||| ||||||||||           ||||||||| ||||||||||| || |||||||||| ||||||||||||    
T  19839982 actttatatctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtcccaaaagttatcaaccaaatagttgttcaaata 19839883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 38704141 - 38704094
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||||||||| |||| || ||||||||||||||||||    
T  38704141 taaattatggttgtcccaaaagttgttaatcaaatggttgttcaaata 38704094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1839341 - 1839303
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  1839341 actttatctttctattgttttggttttcgtgcaaatatc 1839303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 21353272 - 21353318
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||| ||||||| |||||||||||| |||||    
T  21353272 aaattatggttgtcccaaaagttgtcaatcaaatggttgtttaaata 21353318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6517787 - 6517828
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    ||||||||||||||||| |||||||||||| |||||| ||||    
T  6517787 actttatctctctattgctttggttttcgtgcaaataccaac 6517828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6292196 - 6292232
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  6292196 actttatctctctattattttgattttcgtacaaata 6292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 9226427 - 9226475
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaata 99  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||||||    
T  9226427 taaattataattgtcacaaaagttgtcaaccaaattggttgttcaaata 9226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9581654 - 9581690
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  9581654 actttatctctctattgttttggtttccgtgcaaata 9581690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30640865 - 30640901
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  30640865 actttatctctctattgctttgattttcgtacaaata 30640901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 34124748 - 34124804
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||  ||||||||||||  |||||||||||||||||  |||||||    
T  34124748 taaattatggttgtcttaaaaattgtcaattaaatggttgttcaaataacactcctc 34124804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34888805 - 34888769
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  34888805 actttatctctctattgttttgatttccgtacaaata 34888769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43214055 - 43214019
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  43214055 actttatctctttattgttttggttttcgtgcaaata 43214019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43441813 - 43441849
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  43441813 actttatctctctattgctttggttttcgtgcaaata 43441849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 35213557 - 35213448
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35213557 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaata 35213458  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  35213457 acactcctct 35213448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20822864 - 20822766
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||         |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  20822864 actttatctctctattgctttggttttcgtgcaaataccaatatttttttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 20822766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 754434 - 754325
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  754434 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgttccaaaaattgtcaaccaaatggttgttcaaata 754335  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  754334 acactcctct 754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 13143326 - 13143270
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  13143326 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 13143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 1369487 - 1369534
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  1369487 taaattatggttgtctcaaaaattgtcaaccaaatggttgttcaaata 1369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 18141245 - 18141186
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctat 111  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||  ||||||||||    
T  18141245 taaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcctctat 18141186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 32046824 - 32046872
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||||    
T  32046824 ataaattatggttgtcccataagttgtcaaccaaatggttgttcaaata 32046872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 31883246 - 31883200
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  31883246 aaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaata 31883200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32459512 - 32459403
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||||| |||| ||||||| ||||| ||||||||||||    
T  32459512 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcctaaaagttgtcaatcaaattgttgttcaaata 32459413  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  32459412 acactcctct 32459403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 3832590 - 3832646
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||||| || ||||||| ||||||||||||||||||  |||||||    
T  3832590 taaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcctc 3832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26832721 - 26832757
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  26832721 actttatctctctattgttttggttttcgtgcaaata 26832757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 6856102 - 6856060
Alignment:
Q  57 tatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||| ||||| || |||||||||||||||||||||||||||||    
T  6856102 tatgtttgtctcataaattgtcaaccaaatggttgttcaaata 6856060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 6531124 - 6531067
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||  | || |||||||||||||||||||||||  ||||||||    
T  6531124 taaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcctct 6531067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 868948 - 868912
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  868948 actttatctctctattgatttggtttttgtacaaata 868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46852128 - 46852020
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||| | |||||||||||||||||||| |||||||||||          ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46852128 actttatttgtctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaata 46852029  T
Q  100 gtactcctc 108  Q
      |||||||    
T  46852028 acactcctc 46852020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 3953467 - 3953362
Alignment:
Q  5 tatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtac 103  Q
    ||||||||||||| |||||||||| | |||||||||||         |||||||||||||||| |||||||||||||||||||| |||||||||||  ||    
T  3953467 tatctctctattgctttggttttcatgcaaatatcaactttttctttataaattatgattgtctcaaaaattgtcaaccaaatgattgttcaaataacac 3953368  T
Q  104 tcctct 109  Q
    ||||||    
T  3953367 tcctct 3953362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21005172 - 21005062
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||| |||| ||| |||||||| |||||||||||         |||||||||||||||||||||| || |||||||||||||| ||||||||    
T  21005172 actttatctctcaattgctttagttttcgtgcaaatatcaactttttctttataaattatgattgtcccaaaagttatcaaccaaatggttcttcaaata 21005073  T
Q  100 gtactcctcta 110  Q
      |||||||||    
T  21005072 tcactcctcta 21005062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 51465858 - 51465801
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  51465858 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 51465801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 55400074 - 55400183
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  55400074 actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 55400173  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  55400174 acactcctct 55400183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 46019537 - 46019636
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaa-cnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| ||||||||||||||||||| | | |         ||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  46019537 actttatctctctattgctttggttttcgtacaaatacctatcttttctttgtaaattatggttgttccaaaagttgtcaaccaaatggttgttcaaata 46019636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 6999297 - 6999354
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  6999297 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 6999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24482959 - 24482850
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||| |||||||||||||||||| |||||| ||||          ||| ||||| ||||||||||| |||| |||||||||||||||||||||    
T  24482959 actttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaagttatggttgtcccaaaagttgtaaaccaaatggttgttcaaata 24482860  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  24482859 acactcctct 24482850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50206966 - 50206925
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  50206966 actttatctctctattgttttggttttcgtgcaaatatcaac 50206925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 14771536 - 14771493
Alignment:
Q  56 ttatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
T  14771536 ttatgattgtcccaaaaattgtcaaacaaatggttattcaaata 14771493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 21196251 - 21196298
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  21196251 taaattatgattatcccataaattgtcaatcaaatggttgttcaaata 21196298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39697218 - 39697119
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaa-cnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| ||||||||||           ||||||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  39697218 actttatctctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtcccaaaagttgtcaatcaaatagttgttcaaata 39697119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 52937310 - 52937357
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  52937310 taaattatggttgtctcaaaaattatcaaccaaatggttgttcaaata 52937357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 18741243 - 18741301
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctcta 110  Q
    ||||||||| |||||||| ||||| || ||||||||||||||||||||| | |||||||    
T  18741243 taaattatggttgtcccataaattatccaccaaatggttgttcaaatagcaatcctcta 18741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 26645153 - 26645207
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcc 106  Q
    |||||||||||| ||||| ||||||||| |||||| |||||||||||| ||||||    
T  26645153 taaattatgattatcccataaattgtcatccaaatagttgttcaaataatactcc 26645207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 9719391 - 9719345
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| || |||||||| ||||||| ||||||||||||||||||    
T  9719391 aaattatggttatcccaaaagttgtcaatcaaatggttgttcaaata 9719345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20080147 - 20080245
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac-nnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaa 97  Q
    |||||||||||||||||||||||||| ||| |||||| | ||         |||||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  20080147 actttatctctctattgttttggtttccgtgcaaatacctactttttctttataaattatggttgtcacaaaaattatcaaccaaattggttgttcaaa 20080245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24645431 - 24645460
Alignment:
Q  1 actttatctctctattgttttggttttcgt 30  Q
    ||||||||||||||||||||||||||||||    
T  24645431 actttatctctctattgttttggttttcgt 24645460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 36412250 - 36412307
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaa-ccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||||| || ||||||| |||||||||||||||||||  |||||||    
T  36412250 taaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 46253697 - 46253738
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    ||||||||||||||||| |||||||||||| |||||| ||||    
T  46253697 actttatctctctattgctttggttttcgtgcaaataccaac 46253738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 24095350 - 24095294
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||  |||| ||||||||||||||| ||||||||||  |||||||    
T  24095350 taaattatggttgtcataaaagttgtcaaccaaatggatgttcaaataacactcctc 24095294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37927201 - 37927165
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  37927201 actttatctctctattgctttggtttccgtacaaata 37927165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43573539 - 43573425
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||          |||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  43573539 actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtctcaaaaattgtcaaccaaatgattgttcaaata 43573440  T
Q  100 gtactcctctattat 114  Q
      |||||||||||||    
T  43573439 acactcctctattat 43573425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 28036819 - 28036931
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  28036819 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaatta 28036918  T
Q  100 gtactcctctatt 112  Q
      |||||||||||    
T  28036919 acactcctctatt 28036931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 11352918 - 11352861
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  11352918 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 11352861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33180706 - 33180598
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc-aacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||| ||||||   ||         ||||||||| |||||| || || ||||||||||||||||||||||||||    
T  33180706 actttatctctctattgttttggttttcgtgcaaatacataatttctctttataaattatcattgtctcataagttgtcaaccaaatggttgttcaaata 33180607  T
Q  100 gtactcctc 108  Q
     ||||||||    
T  33180606 atactcctc 33180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 44184503 - 44184439
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattataa 116  Q
    ||||||||| |||| |||||| |||||||||||||||||||||||||| |||| |||| ||||||    
T  44184503 taaattatggttgttccaaaagttgtcaaccaaatggttgttcaaataatactactcttttataa 44184439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40231702 - 40231664
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40231702 actttatctctctattgttttggttttcgtacaaatatc 40231664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 41894042 - 41894098
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||||  |||||||    
T  41894042 taaattatggttgtcacaaaaattgtcaactaaatggttgttcaaataacactcctc 41894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 42555690 - 42555738
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  42555690 ataaattatggttgtctcaaaagttgtcaaccaaatggttgttcaaata 42555738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1504356 - 1504257
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnataaa-ttatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||||  |||| | ||        ||||| ||||||||||||||||| || ||| | |||||||||||||||||    
T  1504356 actttatctctctattgttttggttttcgtatcaatacctacttttctttataaatttatgattgtcccaaaagttatcaccaaaatggttgttcaaata 1504257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 7817763 - 7817821
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctcta 110  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||  |||||||||    
T  7817763 taaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctcta 7817821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12645906 - 12645796
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||| ||||||| |||||||||||          ||||||||| || || ||||| ||||||||||||| ||||||||||||    
T  12645906 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttatctcaaaagttgtcaaccaaatagttgttcaaata 12645807  T
Q  100 gtactcctcta 110  Q
      |||||||||    
T  12645806 tcactcctcta 12645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 16980423 - 16980468
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 97  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||    
T  16980423 taaattatgattgtctcaaaagttgtcaactaaatggttgttcaaa 16980468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 13729853 - 13729909
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||||||||| |||||||||||||||||| | |||||  |||||||    
T  13729853 taaattatggttgtcccaaaagttgtcaaccaaatggttgctgaaataacactcctc 13729909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31844601 - 31844565
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  31844601 actttatctctctattgttttggtttttgtacaaata 31844565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 34757416 - 34757348
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaatagtactcctctattataagt 118  Q
    |||||||||| ||||| ||||| |||||||||||| ||||||||||||||  ||||||| || ||||||    
T  34757416 ataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcctcaataataagt 34757348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43482598 - 43482634
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  43482598 actttatctctctattgttttggttttcgtgcaaata 43482634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 46532577 - 46532677
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc-aacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaat 98  Q
    ||||||||||||||||||||||||||||||  ||||| | ||         |||||||||| ||||| ||||| |||||||||||| |||||||||||||    
T  46532577 actttatctctctattgttttggttttcgtgtaaatacctaatttttctttataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaat 46532676  T
Q  99 a 99  Q
    |    
T  46532677 a 46532677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10055628 - 10055529
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac-nnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||          ||||||||  |||||||| || |||||||||||||||||||| |||||    
T  10055628 actttatctctctattgctttggtttttgtacaaataccaactttttctttgtaaattatagttgtcccataagttgtcaaccaaatggttgtttaaata 10055529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 10700129 - 10700083
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  10700129 aaattatggttgtcccaaaagttgtcaatcaaatgattgttcaaata 10700083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 49069372 - 49069418
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  49069372 aaattatagttgtcccaaaagttgtcaatcaaatggttgttcaaata 49069418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4225827 - 4225856
Alignment:
Q  1 actttatctctctattgttttggttttcgt 30  Q
    ||||||||||||||||||||||||||||||    
T  4225827 actttatctctctattgttttggttttcgt 4225856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6109967 - 6109938
Alignment:
Q  1 actttatctctctattgttttggttttcgt 30  Q
    ||||||||||||||||||||||||||||||    
T  6109967 actttatctctctattgttttggttttcgt 6109938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41399159 - 41399130
Alignment:
Q  1 actttatctctctattgttttggttttcgt 30  Q
    ||||||||||||||||||||||||||||||    
T  41399159 actttatctctctattgttttggttttcgt 41399130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3062405 - 3062441
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  3062405 actttatctctctattgttttggtttttgtgcaaata 3062441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20482602 - 20482638
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||||||  |||||||||    
T  20482602 actttatctctctattgttttggtttatgtacaaata 20482638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25067298 - 25067334
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||||| | ||||||    
T  25067298 actttatctctctattgttttggttttcatgcaaata 25067334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 36533856 - 36533900
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 97  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||    
T  36533856 aaattatggttgtcccaaaagttgtcatcaaaatggttgttcaaa 36533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 41458745 - 41458781
Alignment:
Q  74 ttgtcaaccaaatggttgttcaaatagtactcctcta 110  Q
    ||||||||||||||||||||||||||  |||||||||    
T  41458745 ttgtcaaccaaatggttgttcaaataacactcctcta 41458781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44184555 - 44184519
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  44184555 actttatctctctattgctttggttttcgtgcaaata 44184519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 22819776 - 22819838
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattat 114  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  22819776 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctctattat 22819838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 17683468 - 17683525
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  17683468 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 17683525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26718495 - 26718542
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26718495 taaattatgattgtcccaaaaattatcaaccaaatggttattcaaata 26718542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26731123 - 26731170
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26731123 taaattatgattgtcccaaaaattatcaaccaaatggttattcaaata 26731170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 31657773 - 31657830
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||| ||| |||||||||||||||||||||||||||||||| |||||  ||||||||    
T  31657773 taaatgatggttgtcccaaaaattgtcaaccaaatggttgtttaaataacactcctct 31657830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 39344976 - 39344867
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaa-cnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||           ||||||||||||||| ||||| || |||||||||||||||||||||||    
T  39344976 actttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatgattgtctcaaaagttatcaaccaaatggttgttcaaata 39344877  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  39344876 acactcctct 39344867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 47099147 - 47099203
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||||  |||||||    
T  47099147 taaattatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcctc 47099203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 18882919 - 18882872
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||    
T  18882919 taaattatgatttttccaaaagttgtcaaccaaatggttgttcaaata 18882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 45143617 - 45143570
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  45143617 taaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaata 45143570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 45152386 - 45152339
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  45152386 taaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaata 45152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 52846173 - 52846126
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  52846173 taaattatgattgtcctaaaaattgtcaatcaaatagttgttcaaata 52846126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14010114 - 14010004
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||| ||||||||||||| |||||| |||          |||||||||| ||||||||||| |||||||||||||  || ||||||||    
T  14010114 actttatctctctattattttggttttcgtgcaaataccaattttttctttataaattatggttgtcccaaaagttgtcaaccaaataattattcaaata 14010015  T
Q  100 gtactcctcta 110  Q
      |||||||||    
T  14010014 acactcctcta 14010004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 38338867 - 38338809
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    |||||||||| |||| ||||||||| ||||||||||| |||||| |||| |||||||||    
T  38338867 ataaattatggttgttccaaaaattatcaaccaaatgattgttcgaataatactcctct 38338809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 42491202 - 42491248
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42491202 aaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaata 42491248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 50831698 - 50831652
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  50831698 aaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaata 50831652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 12799841 - 12799901
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctatt 112  Q
    ||||||||||||||| || || |||| |||||||||||||||||||||  | |||||||||    
T  12799841 taaattatgattgtcacataagttgttaaccaaatggttgttcaaataacattcctctatt 12799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 12595570 - 12595527
Alignment:
Q  56 ttatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||| |||||||||||||||||| | |||||||||||||||||    
T  12595570 ttatggttgtcccaaaaattgtcatcaaaatggttgttcaaata 12595527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 46405918 - 46405871
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  46405918 taaattatggttgtccaaaaaattatcaaccaaatgattgttcaaata 46405871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 2999239 - 2999297
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctcta 110  Q
    ||||||||| |||||| |||| |||||||  |||||||||||||||||  |||||||||    
T  2999239 taaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataacactcctcta 2999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 40609742 - 40609800
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaatagtactcctcta 110  Q
    |||||||| ||||| ||||| |||||||||||| ||||||||||||||  |||||||||    
T  40609742 aaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcctcta 40609800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 13139225 - 13139321
Alignment:
Q  3 tttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||| ||||||||||||| |||||| ||||          ||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  13139225 tttatctctctatttttttggttttcgtgcaaataccaactttttctttgtaaattatagttgtcc-aaaaattatcaaccaaatggttgttcaaata 13139321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2313317 - 2313281
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  2313317 actttatctttctagtgttttggttttcgtacaaata 2313281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7628104 - 7628139
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7628104 actttatctctctattgttttgg-tttcgtacaaata 7628139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18882971 - 18882935
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  18882971 actttatctctctattgctttgattttcgtacaaata 18882935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21617258 - 21617294
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  21617258 actttatctctctattgttttgattttcgtgcaaata 21617294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 32696713 - 32696685
Alignment:
Q  71 aaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||    
T  32696713 aaattgtcaaccaaatggttgttcaaata 32696685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33860721 - 33860757
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  33860721 actttatctctctattgttttggtttccgtgcaaata 33860757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51573628 - 51573592
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  51573628 actttatctctctattgctttgattttcgtacaaata 51573592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51852151 - 51852187
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  51852151 actttatctctctattgttttggtttttgtgcaaata 51852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51887738 - 51887774
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  51887738 actttatctctctattgttttgattttcgtgcaaata 51887774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 32869953 - 32870010
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32869953 taaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactcctct 32870010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2563779 - 2563878
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| |||||||||||||||||||| |||||| ||||         ||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  2563779 actttatctttctattgttttggttttcgtgcaaataccaactttttctttataaattatgattgtcctaaaagttgtcaaccaaatgattgttcaaata 2563878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 13347758 - 13347711
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13347758 taaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaata 13347711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6170705 - 6170814
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  6170705 actttatctctctattgctttggttttcgtgcaaataccaattttttttttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 6170804  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  6170805 acactcctct 6170814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 13765527 - 13765584
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  13765527 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 13765584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35589383 - 35589275
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac-nnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||| |||||||||||          ||||||||| |||||||||||||| ||||| |||| |||||| |||||    
T  35589383 actttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaaaaattatcaactaaatagttgtttaaata 35589284  T
Q  100 gtactcctc 108  Q
      |||||||    
T  35589283 acactcctc 35589275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 36644028 - 36643972
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||    
T  36644028 taaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcctc 36643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 24563011 - 24562904
Alignment:
Q  3 tttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagt 101  Q
    ||||||||||||||| ||||||||||||  ||||| ||||         |||||||||| |||||| |||| ||||||||||||||||||||||||||      
T  24563011 tttatctctctattgctttggttttcgtgtaaataccaaccttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataac 24562912  T
Q  102 actcctct 109  Q
    ||||||||    
T  24562911 actcctct 24562904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6999064 - 6998955
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  6999064 actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgtttaaata 6998965  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  6998964 acactcctct 6998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 23352851 - 23352794
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  23352851 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 23352794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 3012795 - 3012739
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  3012795 aaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 3012739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 4023294 - 4023247
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||    
T  4023294 taaattatgattgtctcataaattgtcaaccaaatggttgttgaaata 4023247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 7574562 - 7574609
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  7574562 taaattatagttgttccaaaaattgtcaaccaaatggttgttcaaata 7574609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 36212005 - 36211944
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctatt 112  Q
    |||||||||||||||| || || || |||||||||||||||||||||||  |||| ||||||    
T  36212005 ataaattatgattgtcacataatttatcaaccaaatggttgttcaaataacactcatctatt 36211944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9377531 - 9377630
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac-nnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||||| ||          |||||||||| |||| || || |||||||| |||||||||||||||||    
T  9377531 actttatctctctattgctttggttttcgtgcaaatatctactttttctttgtaaattatgactgtctcataagttgtcaactaaatggttgttcaaata 9377630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9634432 - 9634333
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac-nnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||| |||||||||||||||||| |||||| ||||          ||||||||| |||| | |||| |||||||||||||| |||||||||||    
T  9634432 actttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgttcaaaaagttgtcaaccaaatgattgttcaaata 9634333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 36517323 - 36517370
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||||||| || |||| ||||| ||||||||||||    
T  36517323 taaattatgattgtcccaaaagttatcaatcaaatagttgttcaaata 36517370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 37105765 - 37105812
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  37105765 taaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaata 37105812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39449342 - 39449441
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnn-ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||         |||||| ||| |||| |||||||||||||| |||||||||||| |||||    
T  39449342 actttatctctctattgctttgattttcgtgcaaataccaactttttctttataaatgatggttgttccaaaaattgtcaatcaaatggttgtttaaata 39449441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 7258504 - 7258458
Alignment:
Q  53 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||  |||||||||||||||| || ||||||||||||||||||    
T  7258504 aaattatagttgtcccaaaaattgttaatcaaatggttgttcaaata 7258458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28245803 - 28245901
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||||||||||| |||||| | |          ||||||| | ||||  ||||| ||||||||||||||||||||||||||    
T  28245803 actttatctctctattgctttggttttcgtgcaaatacctatttttctttgtaaattaaggttgtttcaaaagttgtcaaccaaatggttgttcaaata 28245901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 34119596 - 34119550
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaat 98  Q
    |||||||||| |||| || || |||||||||||||||||||||||||    
T  34119596 taaattatgagtgtctcataagttgtcaaccaaatggttgttcaaat 34119550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4061958 - 4061922
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  4061958 actttatctctctattgttttggtttccgtgcaaata 4061922  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7648465 - 7648501
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||||||||||||| || ||||||    
T  7648465 actttatctctctattgttttggtttttgtgcaaata 7648501  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 10711851 - 10711907
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||||||||  ||||| || |||||||||| ||||||||||||  |||||||    
T  10711851 taaattatgattgtttcaaaagttatcaaccaaatagttgttcaaataacactcctc 10711907  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30546366 - 30546330
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||||| | ||||||    
T  30546366 actttatctctctattgttttggttttcatgcaaata 30546330  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 39213714 - 39213658
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||| ||| ||||||||||| ||||||| |||||||||||| |||||  |||||||    
T  39213714 taaatgatggttgtcccaaaagttgtcaatcaaatggttgtttaaataacactcctc 39213658  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 41586612 - 41586548
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattataa 116  Q
    ||||||||| |||| ||| || |||||||| |||||||||||||||||  ||| |||||| ||||    
T  41586612 taaattatggttgttccataagttgtcaactaaatggttgttcaaataacacttctctataataa 41586548  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 42569674 - 42569615
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctcta 110  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  42569674 ataaattatggttgtcctaaaaattatcaaccaaatggttgttcaaataatactcctcta 42569615  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 16872152 - 16872053
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||| |||| ||||||| |||||||||||          ||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  16872152 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaaaagttgttaaccaaatggttgttcaaata 16872053  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31597023 - 31597131
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||||||||||||||| || |||||| ||||          ||||||||||||||| ||||| || |||| ||||||||||||||||||    
T  31597023 actttatctctctattgttttggtttttgtgcaaataccaactttttctttgtaaattatgattgtctcaaaagttatcaatcaaatggttgttcaaata 31597122  T
Q  100 gtactcctc 108  Q
      |||||||    
T  31597123 acactcctc 31597131  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 12707277 - 12707339
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattat 114  Q
    ||||||||| |||||||| || |  |||||||||||||||||||||||  |||||||||||||    
T  12707277 taaattatggttgtcccataagtgctcaaccaaatggttgttcaaataacactcctctattat 12707339  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 41541983 - 41542029
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 97  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||    
T  41541983 ataaattatggttgtcccataagttgtcaaccaaatggttgttcaaa 41542029  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 36885432 - 36885375
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||| |||||||| || ||||| ||||||||||||||||||||  ||||||||    
T  36885432 taaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcctct 36885375  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12783840 - 12783876
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12783840 actttatctctctattgttttggtttccgtacaaata 12783876  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 36568088 - 36568135
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||| |||||||| || ||||||| ||||||||||||||||||    
T  36568088 taaattatggttgtcccataagttgtcaatcaaatggttgttcaaata 36568135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 43397700 - 43397747
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    ||||||||||||||| | ||| ||||||||||||| ||||||||||||    
T  43397700 taaattatgattgtctctaaagttgtcaaccaaatagttgttcaaata 43397747  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 2733113 - 2733171
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaacc-aaatggttgttcaaatagtactcctc 108  Q
    |||||||||||||||| |||||||||| |||| || ||||||||||||||  |||||||    
T  2733113 ataaattatgattgtcacaaaaattgttaaccgaattggttgttcaaataacactcctc 2733171  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28646747 - 28646785
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc 39  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  28646747 actttatctctctgttgctttggttttcgtacaaatatc 28646785  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28651331 - 28651369
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc 39  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  28651331 actttatctctctgttgctttggttttcgtacaaatatc 28651369  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 41701292 - 41701338
Alignment:
Q  51 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 97  Q
    ||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  41701292 ataaattatgattgtccaataaattatcaaccaaacggttgttcaaa 41701338  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 10592242 - 10592206
Alignment:
Q  63 tgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  10592242 tgtcccaaaagttgtcaatcaaatggttgttcaaata 10592206  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 30439450 - 30439394
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||| || || || |||||||||||||||||||||||  |||||||    
T  30439450 taaattatggttgtcacataagttatcaaccaaatggttgttcaaataacactcctc 30439394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 34018935 - 34018991
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 108  Q
    ||||||||| ||||||| ||| |||| ||||||||||||| |||||||  |||||||    
T  34018935 taaattatggttgtcccgaaagttgttaaccaaatggttgatcaaataacactcctc 34018991  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36424598 - 36424562
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  36424598 actttatctctctattgttttggtttccgtgcaaata 36424562  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41159885 - 41159849
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  41159885 actttatctctctattgctttggttttcgtgcaaata 41159849  T

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Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12007 - 12116
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 99  Q
    |||||||||||||||||||||||||||||| || ||| ||||          ||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  12007 actttatctctctattgttttggttttcgtgcacataccaactttttctttgtaaattatggttgtcgcaaaagttgtcaaccaaatagttgttcaaata 12106  T
Q  100 gtactcctct 109  Q
      ||||||||    
T  12107 acactcctct 12116  T

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Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 11091 - 11148
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||||||||| || || |||||||||||| |||||||||||||  ||||||||    
T  11091 taaattatgattgtcacataagttgtcaaccaaaaggttgttcaaataacactcctct 11148  T

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Target: scaffold0532; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11039 - 11075
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaata 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  11039 actttatctctctattgttttgattttcgtgcaaata 11075  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 38552 - 38609
Alignment:
Q  52 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 109  Q
    ||||||||  ||||||||||| |||||||| |||||||||||||||||  ||||||||    
T  38552 taaattatagttgtcccaaaagttgtcaactaaatggttgttcaaataacactcctct 38609  T

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Target: scaffold1956 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 845 - 883
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatc 39  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  845 actttatctctctattattttggttttcgtgcaaatatc 883  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8289 - 8330
Alignment:
Q  1 actttatctctctattgttttggttttcgtacaaatatcaac 42  Q
    |||||||| |||||||| |||||||||||| |||||||||||    
T  8289 actttatccctctattgctttggttttcgtgcaaatatcaac 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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