View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_7 (Length: 499)

Name: NF10441_low_7
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_7
NF10441_low_7
[»] chr7 (28 HSPs)
chr7 (18-477)||(11816433-11816881)
chr7 (169-472)||(11820166-11820471)
chr7 (18-167)||(11813851-11814000)
chr7 (18-167)||(11814971-11815120)
chr7 (18-165)||(11819969-11820116)
chr7 (18-164)||(11812032-11812178)
chr7 (18-158)||(11808719-11808861)
chr7 (26-163)||(11810385-11810523)
chr7 (18-158)||(11815917-11816058)
chr7 (18-157)||(11808307-11808446)
chr7 (183-477)||(11808930-11809225)
chr7 (169-291)||(11814049-11814173)
chr7 (169-292)||(11815169-11815294)
chr7 (18-138)||(11809666-11809786)
chr7 (172-266)||(11810578-11810672)
chr7 (18-157)||(11811321-11811464)
chr7 (169-267)||(11812230-11812328)
chr7 (18-104)||(11820947-11821033)
chr7 (282-419)||(44572275-44572411)
chr7 (337-461)||(27994137-27994261)
chr7 (326-434)||(11812375-11812484)
chr7 (323-462)||(22291047-22291185)
chr7 (310-463)||(27616551-27616714)
chr7 (329-433)||(11810726-11810829)
chr7 (337-465)||(11814207-11814333)
chr7 (330-465)||(11815320-11815454)
chr7 (366-465)||(9729712-9729810)
chr7 (29-155)||(11812924-11813052)
[»] chr8 (10 HSPs)
chr8 (18-156)||(44249238-44249376)
chr8 (18-158)||(44252848-44252989)
chr8 (308-465)||(13097667-13097824)
chr8 (284-408)||(2874848-2874972)
chr8 (323-407)||(18393350-18393434)
chr8 (174-261)||(44249424-44249511)
chr8 (323-461)||(15850241-15850390)
chr8 (384-463)||(15131812-15131891)
chr8 (174-249)||(44253035-44253110)
chr8 (351-408)||(2797262-2797319)
[»] chr6 (8 HSPs)
chr6 (310-463)||(12844141-12844293)
chr6 (324-465)||(17261821-17261962)
chr6 (325-463)||(14494226-14494364)
chr6 (307-459)||(19294570-19294721)
chr6 (323-459)||(34013722-34013857)
chr6 (323-459)||(34010993-34011128)
chr6 (307-408)||(2602367-2602467)
chr6 (323-434)||(33234694-33234805)
[»] chr2 (8 HSPs)
chr2 (340-465)||(41849233-41849358)
chr2 (321-461)||(17651490-17651628)
chr2 (324-465)||(34409369-34409509)
chr2 (324-408)||(38783555-38783639)
chr2 (323-465)||(26576298-26576439)
chr2 (310-438)||(9929914-9930041)
chr2 (390-463)||(18724597-18724670)
chr2 (316-360)||(15989836-15989880)
[»] chr4 (8 HSPs)
chr4 (282-424)||(3420071-3420212)
chr4 (323-465)||(40288940-40289081)
chr4 (330-465)||(45612230-45612364)
chr4 (323-453)||(55680927-55681057)
chr4 (323-463)||(54305856-54305996)
chr4 (321-364)||(44508008-44508051)
chr4 (384-465)||(29987905-29987985)
chr4 (324-393)||(32595256-32595325)
[»] chr1 (6 HSPs)
chr1 (323-465)||(16426661-16426802)
chr1 (332-407)||(3387934-3388009)
chr1 (323-441)||(32741106-32741220)
chr1 (324-360)||(23636312-23636348)
chr1 (390-463)||(23432107-23432180)
chr1 (284-356)||(48632323-48632395)
[»] scaffold1723 (1 HSPs)
scaffold1723 (280-406)||(136-258)
[»] chr5 (1 HSPs)
chr5 (323-359)||(32676423-32676459)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 11816433 - 11816881
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  11816433 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagaaggtatgatgtccatctccaccattcaatttttcattaataattga 11816532  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattacactatagaaatatcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaa 217  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11816533 aactgcatgtggtacaaaaaagataataatttagattacactatagaaatatcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaa 11816632  T
Q  218 tttgaattgtacatagaagaagttctctaaaaaatatcgatcaagattttgaaattgtgtaaccaactatgaagcgcggacttctataagattaggcatg 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11816633 tttgaattgtacatagaagaagttccctaaaaaatatcgatcaagattttgaaattgtgtaaccaactatgaagtgcggacttctataagattaggcatg 11816732  T
Q  318 ttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgt 417  Q
    |||||||||||||||||| |||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11816733 ttgcagtgtccgacactcttat-----------gacacgtgtcagacgagtgtcctaaataagttattttcttctttatttcgacactcctaagatccgt 11816821  T
Q  418 gtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaaagaatgtatgaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11816822 gtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaaagaatgtatgaa 11816881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 169 - 472
Target Start/End: Original strand, 11820166 - 11820471
Alignment:
Q  169 tcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagattttg 268  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || ||||| || || | |||||| |||||||||| ||||||     
T  11820166 tcctataaagtatctataaattaagtggcgcacacaaacaaaaatgtaatttgaattttatatagacgaggtcccctaaaagatatcgatcatgatttta 11820265  T
Q  269 aaa--ttgtgtaaccaactatgaagcgcggacttctataaga-ttaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacg 365  Q
    |||  ||||||||||| || |||||| |||| | || | ||| ||| | ||||  |  ||||||| |||  ||||||||||||| ||||||||||||||     
T  11820266 aaaaattgtgtaaccatctgtgaagcacgga-tactttcagagttacgtatgtcacgatgtccgaaacttgtatgacactcgtacgacacgtgtcagaca 11820364  T
Q  366 agtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    |||||||||||||||||||||||||||||| || | ||||| || |||| ||||||||||  ||||| |||||||| ||||||||||| |||||||||||    
T  11820365 agtgttctaaataagttattttcttctttactttgtcactcttaggatcggtgtctgacatctatataacacttatttgaggtgtgtcagacaactcaaa 11820464  T
Q  466 agaatgt 472  Q
    | |||||    
T  11820465 ataatgt 11820471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 11813851 - 11814000
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||||||||||| ||||||||||||||||    
T  11813851 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccaggggaggtatgatgtcgatctccaccattcaatatttcattaataattga 11813950  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattacactatagaaat 167  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| |||||    
T  11813951 aactgcatgtggtacaaaaaagacaatagttttgattaaactatcgaaat 11814000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 11814971 - 11815120
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||| |||| |||||||||||||||| | ||||||||||||||||    
T  11814971 agaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccaccaggagaggtatgatgtccatctccaccattcagtatttcattaataattga 11815070  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattacactatagaaat 167  Q
    ||||||||| |||| |||||||| |||||||| |||||||||||||||||    
T  11815071 aactgcatgcggtataaaaaagacaatagttttgattacactatagaaat 11815120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 11819969 - 11820116
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||| |||||||| || ||||||||||| |||||||| |||||||||| ||| ||||| ||||| |||||||||||||||||| |||||||||||||||    
T  11819969 agaaattgttgtaaaacatacttggatccacttccgtggagtttccaccggaggaggtatgatgctcatctccaccattcaattcttcattaataattga 11820068  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattacactatagaa 165  Q
    |||||||||||||| ||||| || ||||||||||||||||| ||||||    
T  11820069 aactgcatgtggtataaaaatgacaatagtttagattacacaatagaa 11820116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 11812032 - 11812178
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||| ||||||||||| ||||||||| ||||||||| ||||||||||  ||| ||||| | ||||||||||||  ||||||| ||||||||||||||||    
T  11812032 agaaaatgttgtaacacatacttggattctcttccgtaaagtttccacttgaggaggtatggtgcccatctccatgattcaatatttcattaataattga 11812131  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattacactataga 164  Q
    | ||||||||||||||||||||| | ||| |||||||||||||||||    
T  11812132 atctgcatgtggtacaaaaaagatattagcttagattacactataga 11812178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 11808719 - 11808861
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||||| |||||||  ||| | |||||||||||| ||||| || |||||||||||||||||||||||||||| |||| |||    
T  11808719 agaaagtgttgtaacacgtacttggttcctcttttgtggaatttccaccagaggaggtatgacgcccatctccaccattcaatttttcattgataaatga 11808818  T
Q  118 aactgcatgtggtac--aaaaaagagaatagtttagattacac 158  Q
    |||||||||| ||||  |||||||| ||| |||||||||||||    
T  11808819 aactgcatgttgtaccaaaaaaagacaattgtttagattacac 11808861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 11810385 - 11810523
Alignment:
Q  26 ttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattgaaactgcat 125  Q
    ||||||||||||||| ||| |||||| || |||||||||| |||| ||  | |||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  11810385 ttgtaacacgtacttagattctcttctgtaaagtttccactagaggagaaatgatgccgatctccaccaatcaatatttcattaataattgaaactgcat 11810484  T
Q  126 gtggtac-aaaaaagagaatagtttagattacactatag 163  Q
    ||||||| |||||||| | ||||||||||||||||||||    
T  11810485 gtggtacaaaaaaagatattagtttagattacactatag 11810523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 11815917 - 11816058
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaat-ttttcattaataattg 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||  || |||||||| ||||||||||| | ||  |||||||||     
T  11815917 agaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccactagaggaggtccgacgcccatctgcaccattcaatgtgttttttaataatta 11816016  T
Q  117 aaactgcatgtggtacaaaaaagagaatagtttagattacac 158  Q
    ||||| |||||||||||||||||| |||| || |||||||||    
T  11816017 aaactacatgtggtacaaaaaagacaataattaagattacac 11816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 11808307 - 11808446
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |  ||  |||  ||||| |||||| |||||||||||||| |||| |||||||    
T  11808307 agaaagtgttgtaacacgtacttggatcctctttcgtgaagtttccgtcgaaggtggtctgatgctcatctctaccattcaattttttattagtaattga 11808406  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattaca 157  Q
    ||||||| ||||||||||||||| |||| || ||||||||    
T  11808407 aactgcacgtggtacaaaaaagaaaataattgagattaca 11808446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 477
Target Start/End: Original strand, 11808930 - 11809225
Alignment:
Q  183 tataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagattttgaaa--ttgtgtaac 280  Q
    ||||||||||||||||||| ||| ||||||  | ||||||||||||||||||||| || |  ||||||||||||||||||||||| |||  |||||||||    
T  11808930 tataaattaagtgacacactcaatcaaaaacaatatttgaattgtacatagaagaggtcccttaaaaaatatcgatcaagattttaaaaaattgtgtaac 11809029  T
Q  281 caactatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataag 380  Q
    |   ||| ||||    ||   |||| | || ||| ||| || ||||| ||||||   || |||| | || |||| ||||| ||| |||||  |||| |||    
T  11809030 cgtgtataaagcaaaaacacttataggttt-ggcgtgtcgcggtgtctgacactataataacacacatacgacatgtgtcggacaagtgtcataaacaag 11809128  T
Q  381 ttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaaagaatgtatgaa 477  Q
    ||||||||||||||| || |||| ||||| | || |||||| || ||||||| |||||||||||||||||||| |||||||||||  ||||||||||    
T  11809129 ttattttcttctttactttgacattcctaggttcggtgtctaacgcttatataacacttatatgaggtgtgtcagacaactcaaacaaatgtatgaa 11809225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 291
Target Start/End: Original strand, 11814049 - 11814173
Alignment:
Q  169 tcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagatttt- 267  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| || || |||||||||| |||| |||||||     
T  11814049 tcctataaagtatctataaattaagtgacatacacaaacacaaaagaaattttaattgtacatagaagaggtcctttaaaaaatattgatctagatttta 11814148  T
Q  268 -gaaattgtgtaaccaactatgaag 291  Q
      |||||||||||||| ||||||||    
T  11814149 aaaaattgtgtaaccatctatgaag 11814173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 11815169 - 11815294
Alignment:
Q  169 tcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagatttt- 267  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||| || |  ||||||||||||||| |||||||     
T  11815169 tcctataaagtatctataaattaagtgacacacacaaagacaaaagaaatttgaattgtacatagtagaggtcccttaaaaaatatcgatctagatttta 11815268  T
Q  268 -gaaattgtgtaaccaactatgaagc 292  Q
      |||||||||||||  |||||||||    
T  11815269 aaaaattgtgtaaccgtctatgaagc 11815294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 11809666 - 11809786
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| | || ||||  || |||||||| ||| ||||||||| |  |||||||||||    
T  11809666 agaaagtgttgtaacacgtacttggatcatctttcgtgaagtttccactataggaggtctgacgcccatctgcactattcaatttatttttaataattga 11809765  T
Q  118 aactgcatgtggtacaaaaaa 138  Q
    |||| ||||||||||||||||    
T  11809766 aactacatgtggtacaaaaaa 11809786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 11810578 - 11810672
Alignment:
Q  172 tataaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagattt 266  Q
    ||||||||||| ||||| || ||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  11810578 tataaagtatcaataaaataggtgacactcacaaacaaaaaagaaatttgaattgtacaaagaagaggttctctaaaaaatatcgatcatgattt 11810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 11811321 - 11811464
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaat----ttttcattaataa 113  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||| ||||| ||||  || | |||||| ||||||||| |    ||||  |||||||    
T  11811321 agaaagtgttataacacgtacttggattctctttcgtgaagtttccatcagaggaggtctgacgtccatctgcaccattcatttttattttttttaataa 11811420  T
Q  114 ttgaaactgcatgtggtacaaaaaagagaatagtttagattaca 157  Q
    |||||||| ||||||||||||||| || ||||||| ||||||||    
T  11811421 ttgaaactacatgtggtacaaaaatgacaatagttgagattaca 11811464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 11812230 - 11812328
Alignment:
Q  169 tcctataaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaagatttt 267  Q
    ||||||| | ||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||  | | ||||||||||||||||||||||||    
T  11812230 tcctatacaatatctataaattaggtgacacaagcaaacaaaaaagaaatttgaattgtacatagaagagatcccctaaaaaatatcgatcaagatttt 11812328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 11820947 - 11821033
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaattttt 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| |  || ||||  |||||||||||||||||| ||||||||    
T  11820947 agaaagtgttgtaacacgtacttagatcctcttccgtgaagttcccatcgaaggaggtccgatgcccatctccaccatccaattttt 11821033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 44572275 - 44572411
Alignment:
Q  282 aactatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagt 381  Q
    ||||||||||| |||||  || || || ||||| ||| || ||||||||||||||||||||||||||| ||||||||||  ||  |||| |||||| | |    
T  44572275 aactatgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaat-act 44572373  T
Q  382 tattttcttctttatttcgacactcctaagatccgtgt 419  Q
    |||||| ||||||| ||||||||||||| |||| ||||    
T  44572374 tatttttttctttacttcgacactcctacgatcggtgt 44572411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 461
Target Start/End: Complemental strand, 27994261 - 27994137
Alignment:
Q  337 tatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgaca 436  Q
    ||||||||||||| |||| |||||| || |||||  |||||||||| |||||||||||| ||| |||||  |  || | |||||||| || ||||| |||    
T  27994261 tatgacactcgtacgacatgtgtcaaacaagtgtcataaataagttgttttcttctttacttcaacactttttggaccggtgtctgatacctatataaca 27994162  T
Q  437 cttatatgaggtgtgtcggacaact 461  Q
    |||||||||||| ||| ||||||||    
T  27994161 cttatatgaggtctgttggacaact 27994137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 434
Target Start/End: Original strand, 11812375 - 11812484
Alignment:
Q  326 tccgacactcctatgacactcgt-aggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgac 424  Q
    ||||||||||||||||||||  | | |||||||||||||| ||| | ||||| |||||||||||||||| ||| ||| | ||||| | |  |||||||||    
T  11812375 tccgacactcctatgacactttttacgacacgtgtcagacaagtatcctaaaaaagttattttcttcttgattccgatagtcctaggtttagtgtctgac 11812474  T
Q  425 acttatatga 434  Q
    || |||||||    
T  11812475 acatatatga 11812484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 462
Target Start/End: Complemental strand, 22291185 - 22291047
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||||||||||||||| ||||  ||||||||   ||  |||| |||||||| || |||| ||||||| ||||||||||||| |||| || || |    
T  22291185 gtgtccgacactcctatgacacccgtaccacacgtgttgaaccggtgtcctaaataa-ttgtttttttctttacttcgacactcctacgatcggtatccg 22291087  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaactc 462  Q
    |||| |||||  |||| ||| |||  |||| |||||||||    
T  22291086 acacgtatataccactcatacgagccgtgtaggacaactc 22291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 463
Target Start/End: Complemental strand, 27616714 - 27616551
Alignment:
Q  310 taggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacga---------gtgttctaaat-aagttattttcttctttatttc 399  Q
    ||||||||| |  ||||||||||||| ||||||||||||| |||||||||||||| |         |||| |||||| || || ||||||||||||  ||    
T  27616714 taggcatgtcgtggtgtccgacactcatatgacactcgtacgacacgtgtcagacaactaagaccggtgtcctaaataaatttgttttcttctttacatc 27616615  T
Q  400 gacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||||||||| || | ||||| | ||| ||||||||||| |||  ||  |||||||||||||||    
T  27616614 gacactcctaggaacggtgtccggcacctatatgacactcatacaagccgtgtcggacaactca 27616551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 11810726 - 11810829
Alignment:
Q  329 gacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacactt 428  Q
    |||||| || ||||||| ||| ||||| |||| ||| ||| | | |||||| ||||||||||||||| ||||| | ||||| | || |||||||||||||    
T  11810726 gacacttctttgacacttgtacgacacatgtcggactagtatcc-aaataaattattttcttctttacttcgatattcctaggttcggtgtctgacactt 11810824  T
Q  429 atatg 433  Q
    |||||    
T  11810825 atatg 11810829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 465
Target Start/End: Original strand, 11814207 - 11814333
Alignment:
Q  337 tatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgaca 436  Q
    ||||||||| ||| |||||||||  ||| ||| | ||||||||||| ||| |||||| | ||  |||||| || | || |||| ||||||||| || |||    
T  11814207 tatgacacttgtacgacacgtgttggacaagtatcctaaataagttcttt-cttcttcactta-acactcttaggttcggtgtttgacacttacataaca 11814304  T
Q  437 cttatatgaggtgtgtcggacaactcaaa 465  Q
    |||||||||||| ||| ||||||||||||    
T  11814305 cttatatgaggtttgtaggacaactcaaa 11814333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 465
Target Start/End: Original strand, 11815320 - 11815454
Alignment:
Q  330 acactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacact-t 428  Q
    |||||| ||||||||| ||| |||| ||||  ||| ||| | |||||||||||| ||||||||||||||| |||||  || | |  |||||||||||| |    
T  11815320 acactcgtatgacacttgtacgacaagtgttggacaagtatcctaaataagtta-tttcttctttatttcaacactattaggtttggtgtctgacactat 11815418  T
Q  429 atatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    | || |||||||||||| || ||| ||||||||||||    
T  11815419 acataacacttatatga-gtttgtaggacaactcaaa 11815454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 465
Target Start/End: Original strand, 9729712 - 9729810
Alignment:
Q  366 agtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    ||||| ||||||||||| |||||||| | | ||||||||||||  || | || || |||| |||||  ||| |||||||||| |||||||||||||||||    
T  9729712 agtgtcctaaataagttgttttcttcctcacttcgacactccttgga-ctgtatccgacatttatacaacatttatatgaggcgtgtcggacaactcaaa 9729810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 11812924 - 11813052
Alignment:
Q  29 taacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattca--atttttcattaataattgaaactgcatg 126  Q
    |||| |||||||||||||| || |||||||||||||   ||| ||||  || |||||||| ||||||| |  ||| ||  |||||||||||||||  |||    
T  11812924 taactcgtacttggatcctgtttcgtgaagtttccattggaggaggtctgaggcccatctgcaccattaattattattttttaataattgaaactatatg 11813023  T
Q  127 tggtacaaaaaagagaatagtttagatta 155  Q
    | |||||||| ||| |||| || ||||||    
T  11813024 tagtacaaaacagacaataattgagatta 11813052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 44249238 - 44249376
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||| |  || ||||  |||||||||||||||||| ||| | ||  ||  || ||||    
T  44249238 agaaagtgttgtaacacgtacttcgtttctcttccgtgaagtttccatcgaaggaggtgtgatgcccatctccaccatccaaatctttttttgtacttga 44249337  T
Q  118 aactgcatgtggtacaaaaaagagaatagtttagattac 156  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  44249338 aactgcatgtagtacaaaaaagacaatagtttagattac 44249376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 44252848 - 44252989
Alignment:
Q  18 agaaagtgttgtaacacgtacttggatcctcttccgtgaagtttccaccagagtaggtaggatgcccatctccaccattcaatttttcattaataattga 117  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||   ||| ||||| ||| | ||||||||||||||||||| |  || |||||| |    
T  44252848 agaaagtgttgtaacacttacttgtatcctcttccgtgaagtttccattggaggaggtatgattctcatctccaccattcaatttatttttcataattaa 44252947  T
Q  118 aactgcatgtggtacaa-aaaagagaatagtttagattacac 158  Q
    ||||||| ||||||||| |||||| || || |||||||||||    
T  44252948 aactgcacgtggtacaagaaaagaaaacaggttagattacac 44252989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 465
Target Start/End: Complemental strand, 13097824 - 13097667
Alignment:
Q  308 attaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcc 407  Q
    ||||||| ||| || ||||||||||||| ||||||||||||| |||||| ||| ||  ||| | ||||||||| |||||||||||||| |  ||||||||    
T  13097824 attaggcgtgtcgcggtgtccgacactcatatgacactcgtacgacacgagtcggataagtatcctaaataagatattttcttctttactgtgacactcc 13097725  T
Q  408 taagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    | ||| | ||||  ||||| ||||| |||||||||||| | ||||||||||| |||||    
T  13097724 ttagaccggtgtgcgacacctatataacacttatatgaagcgtgtcggacaattcaaa 13097667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 2874848 - 2874972
Alignment:
Q  284 ctatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagtta 383  Q
    ||||||||| |||||  || || ||||| |||||| || || |||||||| |||||||||||| ||  ||||||||||||| ||||| |||||||| |      
T  2874848 ctatgaagcacggacacctctaggattacgcatgtcgcggtctccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatgg 2874947  T
Q  384 ttttcttctttatttcgacactcct 408  Q
    ||||||||||||||| |||||||||    
T  2874948 ttttcttctttattttgacactcct 2874972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 18393350 - 18393434
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcc 407  Q
    |||| |||||||||||||||||||||| ||||||||||  || ||||| |||||||| || ||||| |||||| |||||||||||    
T  18393350 gtgttcgacactcctatgacactcgtacgacacgtgtcgaactagtgtcctaaataatttgttttcatctttacttcgacactcc 18393434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 44249424 - 44249511
Alignment:
Q  174 taaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaaaatatcgatcaa 261  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| ||||| || || |||||||| || | || |||||||||||||||    
T  44249424 taaaatatctataaattaagtgacacgcacaaacaaaaaagaactttgagttataaatagaagaggtcccctcaaaaatatcgatcaa 44249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 461
Target Start/End: Original strand, 15850241 - 15850390
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacga---------gtgttctaaataagttattttcttctttatttcgacactcctaagat 413  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |         |||| ||||||||  |  ||| ||||||| ||| |||||| |||||     
T  15850241 gtgtccgacactcctatgacactcgtacgacacgtatcagacaactaaaatcggtgtcctaaataaaattgttttttctttaattcaacactcttaagac 15850340  T
Q  414 ccgtgtctgacacttatatgacacttatatgag--gtgtgtcggacaact 461  Q
    | ||||||||||| ||||| ||||||||| |||  |||||||||||||||    
T  15850341 cggtgtctgacacctatataacacttataagagccgtgtgtcggacaact 15850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 15131812 - 15131891
Alignment:
Q  384 ttttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||| ||||||| ||||||||||||| || | ||||| ||||| ||||| ||||| |||||||  |||||| ||||||||    
T  15131812 tttttttctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactca 15131891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 44253035 - 44253110
Alignment:
Q  174 taaagtatctataaattaagtgacacacacaaacaaaaatgaaatttgaattgtacatagaagaagttctctaaaa 249  Q
    ||||||||||||||||||||||||| | | ||| |||||  || ||| |||| |||||||||||||| | ||||||    
T  44253035 taaagtatctataaattaagtgacataaaaaaaaaaaaaaaaactttaaattatacatagaagaagtcccctaaaa 44253110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 2797319 - 2797262
Alignment:
Q  351 gacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcct 408  Q
    |||||||||||||| ||||| |||||||| |  |||||| |||||||| |||||||||    
T  2797319 gacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactcct 2797262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 463
Target Start/End: Complemental strand, 12844293 - 12844141
Alignment:
Q  310 taggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactccta 409  Q
    ||||||||| || ||||||||||||||||| ||||  ||| ||||||||||  ||  |||| |||||||| |  |||| ||||||| |||||||||||||    
T  12844293 taggcatgtcgcggtgtccgacactcctataacacctgtacgacacgtgtcgaaccggtgtcctaaataattggtttt-ttctttacttcgacactccta 12844195  T
Q  410 agatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||||  |||||||||||||||| ||||| ||| ||| |||||| |||||||||    
T  12844194 agatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactca 12844141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 465
Target Start/End: Complemental strand, 17261962 - 17261821
Alignment:
Q  324 tgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctga 423  Q
    ||||| ||||||||| |||||||||| |||||||||| ||| ||  | ||||||||| | |||||||||||||||||||||| || ||| | ||||| ||    
T  17261962 tgtccaacactcctacgacactcgtacgacacgtgtccgacaagattcctaaataaggtgttttcttctttatttcgacacttcttagaccggtgtccga 17261863  T
Q  424 cacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    ||| |   | |||||||||||| ||||||||||||| |||||    
T  17261862 cacctgcttaacacttatatgaagtgtgtcggacaattcaaa 17261821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 325 - 463
Target Start/End: Original strand, 14494226 - 14494364
Alignment:
Q  325 gtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgac 424  Q
    |||||||||||||||||||| |||| ||||||||||  || |||||  ||||||| |  |||| ||||||| |||||||||||||  ||| ||||| |||    
T  14494226 gtccgacactcctatgacacccgtacgacacgtgtcgaaccagtgtcttaaataattgttttttttctttacttcgacactcctacaatcggtgtccgac 14494325  T
Q  425 acttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    || ||||| ||||| ||| |||  |||||||||||||||    
T  14494326 acctatataacactaatacgagccgtgtcggacaactca 14494364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 459
Target Start/End: Complemental strand, 19294721 - 19294570
Alignment:
Q  307 gattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactc 406  Q
    |||||||| ||| || ||||||||||||||| |||||| |||| ||||||||||  ||  |||| | |||||| || |||| ||||||| ||||||||||    
T  19294721 gattaggcgtgtcgcggtgtccgacactcctgtgacacccgtacgacacgtgtcgaaccggtgtccaaaataa-ttgtttttttctttacttcgacactc 19294623  T
Q  407 ctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaa 459  Q
     || |||| ||||| ||||| | ||| ||||| ||| |||  |||||||||||    
T  19294622 ttacgatcggtgtccgacacctgtataacactcatacgagccgtgtcggacaa 19294570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 459
Target Start/End: Complemental strand, 34013857 - 34013722
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||||||| |||||||| ||| ||||||||||  ||  |||| |||||||| || |||| ||||||| ||||||||||||| |||  ||||| |    
T  34013857 gtgtccgacactccaatgacacttgtacgacacgtgtcgaaccggtgtcctaaataa-ttgtttttttctttacttcgacactcctacgattggtgtccg 34013759  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaa 459  Q
    |||| ||||| ||||| ||| |||  ||||| |||||    
T  34013758 acacctatataacactcatacgagccgtgtcagacaa 34013722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 459
Target Start/End: Original strand, 34010993 - 34011128
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||||||| |||||||| ||  ||||||||||  ||  |||| |||||||| || |||| ||||||| ||||||||||||| |||  ||||| |    
T  34010993 gtgtccgacactccaatgacacttgtgcgacacgtgtcgaaccggtgtcctaaataa-ttgtttttttctttacttcgacactcctacgattggtgtccg 34011091  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaa 459  Q
    |||| ||||| ||||| ||| |||  ||||| |||||    
T  34011092 acacctatataacactcatacgagccgtgtcagacaa 34011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 408
Target Start/End: Complemental strand, 2602467 - 2602367
Alignment:
Q  307 gattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactc 406  Q
    ||||| || ||| ||||||||||||||| ||||||||| | || |||||||||| ||| ||||  | |||| |||| |||||| |||||||| |||||||    
T  2602467 gattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtg-ccaaaatgagttgttttctactttattttgacactc 2602369  T
Q  407 ct 408  Q
    ||    
T  2602368 ct 2602367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 33234694 - 33234805
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    ||||| |||||  ||| |||||||||| |||||||||  ||| |||||  |||||||||| ||||| |||||| ||||| |||| |  || | ||||| |    
T  33234694 gtgtcggacacatctaagacactcgtacgacacgtgttggacaagtgtcataaataagttgttttcatctttacttcgatactctttggaccggtgtccg 33234793  T
Q  423 acacttatatga 434  Q
    ||||||||||||    
T  33234794 acacttatatga 33234805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 41849358 - 41849233
Alignment:
Q  340 gacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacactt 439  Q
    ||||||| || ||||||| ||  || ||||| ||||||||||||||||||| |||||||||||||||||  ||   ||||| ||||| ||||| ||||||    
T  41849358 gacactcctatgacacgtatcgaacaagtgtcctaaataagttattttcttttttatttcgacactccttggactggtgtccgacacctatataacactt 41849259  T
Q  440 atatgaggtgtgtcggacaactcaaa 465  Q
    |||||||| |||||||||||||||||    
T  41849258 atatgaggcgtgtcggacaactcaaa 41849233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 461
Target Start/End: Complemental strand, 17651628 - 17651490
Alignment:
Q  321 cagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtc 420  Q
    ||||||||||||||| ||||||||| |||  |||| ||||  || ||||| ||||||| ||| |||||||||||| ||||||||||||  || | |||||    
T  17651628 cagtgtccgacactcttatgacacttgtacaacac-tgtcgaacaagtgtcctaaata-gttgttttcttctttacttcgacactcctttgaccggtgtc 17651531  T
Q  421 tgacacttatatgacacttatatgaggtgtgtcggacaact 461  Q
     ||||||||||| |||||||||||||| |||||||||||||    
T  17651530 cgacacttatataacacttatatgaggcgtgtcggacaact 17651490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 465
Target Start/End: Original strand, 34409369 - 34409509
Alignment:
Q  324 tgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctga 423  Q
    |||||||||||||||||| || |||| ||||||||||| ||  |||| |||||||| || |||| ||||||| |||||||| |||| |||| ||||| ||    
T  34409369 tgtccgacactcctatgatacccgtacgacacgtgtcaaaccggtgtcctaaataa-ttgtttttttctttacttcgacacgcctatgatcggtgtccga 34409467  T
Q  424 cacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    ||| ||||| ||||| ||| ||| ||||| | ||||||||||    
T  34409468 cacctatataacactcatacgagttgtgttgaacaactcaaa 34409509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 38783555 - 38783639
Alignment:
Q  324 tgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcct 408  Q
    ||||||||||||||||||||| |||| |||| |||| |||| |||||  |||||||||||||||||| | || ||||||||||||    
T  38783555 tgtccgacactcctatgacacccgtatgacatgtgtgagacaagtgtcttaaataagttattttcttttctacttcgacactcct 38783639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 465
Target Start/End: Complemental strand, 26576439 - 26576298
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||||||||||||||| |||| ||||||||||  ||  ||||  ||||||| | ||||| ||||||| || |||||||||| |||| || ||      
T  26576439 gtgtccgacactcctatgacacccgtacgacacgtgtcgaaccggtgtcttaaataattgatttt-ttctttactttgacactcctacgatcggtctcca 26576341  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    |||| ||||| ||||| ||| |||  |||||||||||||||||    
T  26576340 acacctatataacactcatacgagccgtgtcggacaactcaaa 26576298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 9930041 - 9929914
Alignment:
Q  310 taggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactccta 409  Q
    ||||||||| || ||||||||||||||||||||||||||| || |||||||| |   |||| |||||| | || |||| ||||||| ||| | | |||||    
T  9930041 taggcatgtggctgtgtccgacactcctatgacactcgtacgaaacgtgtcaaaacggtgtcctaaatga-ttgtttttttctttacttcaagattccta 9929943  T
Q  410 agatccgtgtctgacacttatatgacact 438  Q
     |||| ||||| ||||| ||||| |||||    
T  9929942 cgatcggtgtccgacacctatataacact 9929914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 18724597 - 18724670
Alignment:
Q  390 tctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||||| |||||||||||| ||| | ||||||||||| |||||  |||||| | |||| ||||| |||||||||    
T  18724597 tctttacttcgacactccttagaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactca 18724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 15989836 - 15989880
Alignment:
Q  316 tgttgcagtgtccgacactcctatgacactcgtaggacacgtgtc 360  Q
    ||||||||||||| ||||||||||||||||| || ||||| ||||    
T  15989836 tgttgcagtgtccaacactcctatgacactcttacgacacatgtc 15989880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 424
Target Start/End: Complemental strand, 3420212 - 3420071
Alignment:
Q  282 aactatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagt 381  Q
    ||||||||||| |||||  || ||||| ||||| |||||| ||||| ||||||| ||||||| ||||| ||||||||||  |   |||| |||||||| |    
T  3420212 aactatgaagcacggacacctctaagactaggcgtgttgcggtgtctgacactcttatgacaatcgtacgacacgtgtcgaatcggtgtcctaaataa-t 3420114  T
Q  382 tattttcttctttatttcgacactcctaagatccgtgtctgac 424  Q
    | |||| ||||||| ||||||||||||| |||| |||||||||    
T  3420113 tgtttttttctttacttcgacactcctacgatcggtgtctgac 3420071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 465
Target Start/End: Original strand, 40288940 - 40289081
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||| |||||| ||||||||| || |||||||  ||  ||||||||||||| || | || ||||||| ||||||||||||| |||| ||||| |    
T  40288940 gtgtccgacattcctataacactcgtacgatacgtgtcgaaccggtgttctaaataa-ttgtgtttttctttacttcgacactcctacgatcggtgtccg 40289038  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    |||| ||||| ||||| ||| |||   ||||||||||||||||    
T  40289039 acacctatataacactcatacgagtcatgtcggacaactcaaa 40289081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 330 - 465
Target Start/End: Original strand, 45612230 - 45612364
Alignment:
Q  330 acactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctgacactta 429  Q
    ||||||||||||||| |||| ||||||||||| ||  |||| |||||||| || |||| |||||||  |||||||||||| ||||  |||| ||||| |     
T  45612230 acactcctatgacacccgtacgacacgtgtcaaaccggtgtcctaaataa-ttgtttttttctttacgtcgacactcctacgatcgatgtccgacacctg 45612328  T
Q  430 tatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    ||| ||||| ||| |||  |||||||||||||||||    
T  45612329 tataacactcatacgagtcgtgtcggacaactcaaa 45612364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 453
Target Start/End: Complemental strand, 55681057 - 55680927
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    ||||||||||||||||||||||| ||| ||||| ||||  ||   ||| |||||||| |  |||| ||||||| ||||||||||||| |||| ||||| |    
T  55681057 gtgtccgacactcctatgacacttgtacgacacatgtcgaaccgctgtcctaaataattgttttttttctttacttcgacactcctacgatcggtgtccg 55680958  T
Q  423 acacttatatgacacttatatgaggtgtgtc 453  Q
    |||| ||| | ||||| ||| ||| ||||||    
T  55680957 acacctatgtaacactcatacgagctgtgtc 55680927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 463
Target Start/End: Complemental strand, 54305996 - 54305856
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    |||||||||||||||||||||| |||| ||||||||||  ||   ||| |||||||| |  ||||  |||||| |||||||||||||  ||| |||||      
T  54305996 gtgtccgacactcctatgacacccgtacgacacgtgtcgaaccgatgtcctaaataattgttttttgtctttacttcgacactcctacaatcggtgtcca 54305897  T
Q  423 acacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||| ||||  ||||| ||| |||  ||||| |||||||||    
T  54305896 acacctatacaacactcatacgagccgtgtcagacaactca 54305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Complemental strand, 44508051 - 44508008
Alignment:
Q  321 cagtgtccgacactcctatgacactcgtaggacacgtgtcagac 364  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  44508051 cagtgtctgacactcctatgacactcgtacgacacgtgtaagac 44508008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 29987985 - 29987905
Alignment:
Q  384 ttttcttctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    |||| ||||||| ||||||||||||| |||| ||||||||| | | ||| ||||| ||| ||| ||||| ||||||||||||    
T  29987985 tttttttctttacttcgacactcctacgatcggtgtctgac-cctgtataacactcatacgagatgtgttggacaactcaaa 29987905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 32595325 - 32595256
Alignment:
Q  324 tgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctt 393  Q
    ||||||||||| | |||||||||||| ||||||||||  || |||||  |||||||||| || |||||||    
T  32595325 tgtccgacacttcaatgacactcgtacgacacgtgtccaacaagtgtcttaaataagttgttatcttctt 32595256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 465
Target Start/End: Complemental strand, 16426802 - 16426661
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcctaagatccgtgtctg 422  Q
    ||||||||||||||||||| ||||||| |||| |||||  || |||||  |||||||||| |||| ||||||| || ||||||| |  || ||||||  |    
T  16426802 gtgtccgacactcctatga-actcgtacgacatgtgtcgaacaagtgtcataaataagttttttttttctttactttgacactctttgga-ccgtgttcg 16426705  T
Q  423 aca-cttatatgacacttatatgaggtgtgtcggacaactcaaa 465  Q
    ||| ||||||| |||||||||||||| |||| ||||||||||||    
T  16426704 acaccttatataacacttatatgaggcgtgttggacaactcaaa 16426661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 3388009 - 3387934
Alignment:
Q  332 actcctatgacactcgtaggacacgtgtcagacgagtgttctaaataagttattttcttctttatttcgacactcc 407  Q
    |||||||||||||||||| |||||||||| ||| |||||  ||||||| || ||||| |||||| |||||||||||    
T  3388009 actcctatgacactcgtacgacacgtgtcggactagtgtcttaaataatttgttttcatctttacttcgacactcc 3387934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 441
Target Start/End: Complemental strand, 32741220 - 32741106
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataa--gttattttcttctttatttcgacactcctaagatccgtgtc 420  Q
    ||||| ||||||||||||||||||||| ||||||||||  || || || ||||||||  |||||||     |||| ||||||||||||| |||| |||||    
T  32741220 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccagcgtcctaaataattgttattt-----tttacttcgacactcctacgatcggtgtc 32741126  T
Q  421 tgacacttatatgacacttat 441  Q
     ||||| ||||| ||||||||    
T  32741125 cgacac-tatataacacttat 32741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 23636348 - 23636312
Alignment:
Q  324 tgtccgacactcctatgacactcgtaggacacgtgtc 360  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23636348 tgtccgacactcctatgacactcgtaagacacgtgtc 23636312  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 23432180 - 23432107
Alignment:
Q  390 tctttatttcgacactcctaagatccgtgtctgacacttatatgacacttatatgaggtgtgtcggacaactca 463  Q
    |||||| |||| |||||||| || | ||||| ||||||||||| ||||| ||| |||  |||||||||||||||    
T  23432180 tctttaattcggcactcctaggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactca 23432107  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 48632323 - 48632395
Alignment:
Q  284 ctatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacg 356  Q
    ||||||||| |||||  || || || ||||| ||| || |||||||||||||| |||||||||||| ||||||    
T  48632323 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacactcccatgacactcgtatgacacg 48632395  T

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Target: scaffold1723 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 406
Target Start/End: Original strand, 136 - 258
Alignment:
Q  280 ccaactatgaagcgcggacttctataagattaggcatgttgcagtgtccgacactcctatgacactcgtaggacacgtgtcagacgagtgttctaaataa 379  Q
    ||||||||||||| |||||  ||||| |||||||| |||  |||||||    |||||||||| ||||||| |||| ||||| ||| ||||| ||||||||    
T  136 ccaactatgaagcacggacacctatatgattaggcgtgtcccagtgtc---aactcctatgagactcgtacgacatgtgtcggacaagtgtcctaaataa 232  T
Q  380 gttattttcttctttatttcgacactc 406  Q
    || ||||| ||||||| ||||||||||    
T  233 gtcatttt-ttctttacttcgacactc 258  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 32676423 - 32676459
Alignment:
Q  323 gtgtccgacactcctatgacactcgtaggacacgtgt 359  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  32676423 gtgtccgacactcctatgacacttgtacgacacgtgt 32676459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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