View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_9 (Length: 444)
Name: NF10441_low_9
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 115 - 436
Target Start/End: Complemental strand, 794434 - 794113
Alignment:
| Q |
115 |
ttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaagaagtcatgttgcatagtattacaagaagctcttagatattgga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
794434 |
ttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataagaaagaagtcatgttgcggagtattacaagaagctcttagatattgga |
794335 |
T |
|
| Q |
215 |
tgtagtgtataagaagtagaactaggctataaatctttcgnnnnnnnaagatcacatttgctccgtatatatttttagttgtatgccaccatctttgtca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
794334 |
tgtagtgtataagaagtagaactaggctataaatctttcgtttttttaagatcacatttgctccatatatatttttagttgtatgccaccatctttgtca |
794235 |
T |
|
| Q |
315 |
tttgtcatgtatttaacatggatatatggctcaaaatttgttcatttggtttcacttttaatagggccatattaaatgaggtttataaaatttaaatatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794234 |
tttgtcatgtatttaacatggatatatggctcaaaatttgttcatttggtttcacttttaatagggccatattaaatgaggtttataaaatttaaatatg |
794135 |
T |
|
| Q |
415 |
cctcattgatatcattcatctc |
436 |
Q |
| |
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||||||||||||||||||||| |
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| T |
794134 |
tctcattgatatcattcatctc |
794113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 794533 - 794500
Alignment:
| Q |
16 |
gtttccctgtgcaaaaatatagtgttgtccttga |
49 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
794533 |
gtttccttgtgcaaaaatatagtgttgtccttga |
794500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 4055968 - 4055835
Alignment:
| Q |
115 |
ttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaagaagtcatgttgcatagtattacaagaagctcttagatattgga |
214 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4055968 |
ttcagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctcttagatattgga |
4055869 |
T |
|
| Q |
215 |
tgtagtgtataagaagtagaactaggctataaat |
248 |
Q |
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| |||||||||||||||| ||||||||||||||| |
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| T |
4055868 |
tatagtgtataagaagtataactaggctataaat |
4055835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 4056067 - 4056034
Alignment:
| Q |
16 |
gtttccctgtgcaaaaatatagtgttgtccttga |
49 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4056067 |
gtttccctgtgcaaaaatatagtgttgtccttga |
4056034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 25067839 - 25067972
Alignment:
| Q |
115 |
ttcagaaagacgaagtgagtagtaatgatgactcatcaaaaatctcttataaaaaagaagtcatgttgcatagtattacaagaagctcttagatattgga |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25067839 |
ttcagaaagacgaagtgagtagcaatgatgactcatcaaaaatctcttatgagaaagaagtcatgttgcggagtattacaagaagctcttagatattgga |
25067938 |
T |
|
| Q |
215 |
tgtagtgtataagaagtagaactaggctataaat |
248 |
Q |
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| |||||||||||||||| ||||||||||||||| |
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| T |
25067939 |
tatagtgtataagaagtataactaggctataaat |
25067972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 25067740 - 25067773
Alignment:
| Q |
16 |
gtttccctgtgcaaaaatatagtgttgtccttga |
49 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25067740 |
gtttccctgtgcaaaaatatagtgttgtccttga |
25067773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 12576135 - 12576034
Alignment:
| Q |
332 |
atggatatatggctcaaaatttgttcatttggtttcacttttaatagggccatattaaatgaggtttataaaatttaaatatgcctcattgatatcattc |
431 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
12576135 |
atggatatatggctcaaaatttgtttatttggtttcacttttaatagggccatattaaatgaggtttataaaatttaaatatgtctcattaatatcattc |
12576036 |
T |
|
| Q |
432 |
at |
433 |
Q |
| |
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|| |
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|
| T |
12576035 |
at |
12576034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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