View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10442_high_1 (Length: 435)

Name: NF10442_high_1
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10442_high_1
NF10442_high_1
[»] chr4 (13 HSPs)
chr4 (1-419)||(31529019-31529437)
chr4 (101-406)||(31488789-31489094)
chr4 (101-406)||(31030339-31030644)
chr4 (98-406)||(31150959-31151266)
chr4 (42-355)||(31159801-31160114)
chr4 (101-406)||(31020458-31020763)
chr4 (38-318)||(31476292-31476572)
chr4 (38-326)||(31501394-31501682)
chr4 (38-326)||(31496224-31496512)
chr4 (52-266)||(31482180-31482397)
chr4 (109-318)||(31162245-31162455)
chr4 (90-140)||(31244507-31244557)
chr4 (89-141)||(31163606-31163658)
[»] chr6 (17 HSPs)
chr6 (87-406)||(12781322-12781641)
chr6 (87-406)||(12785512-12785831)
chr6 (87-401)||(12782073-12782387)
chr6 (39-148)||(9169383-9169492)
chr6 (80-317)||(33288141-33288378)
chr6 (38-326)||(33307010-33307298)
chr6 (38-148)||(33060079-33060189)
chr6 (38-148)||(33361022-33361132)
chr6 (38-151)||(31566567-31566680)
chr6 (41-146)||(33390600-33390705)
chr6 (87-146)||(33403184-33403243)
chr6 (80-317)||(33412484-33412721)
chr6 (80-148)||(33265448-33265516)
chr6 (80-148)||(33274592-33274660)
chr6 (38-146)||(33642065-33642173)
chr6 (87-138)||(12786252-12786303)
chr6 (187-225)||(33060228-33060266)
[»] chr2 (6 HSPs)
chr2 (38-148)||(17438135-17438245)
chr2 (196-236)||(17642115-17642155)
chr2 (196-236)||(17660984-17661024)
chr2 (196-236)||(17617163-17617203)
chr2 (196-236)||(17698813-17698853)
chr2 (196-236)||(17712025-17712065)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 31529019 - 31529437
Alignment:
Q  1 gcgtgagagttgtcctccatccttggaggacctcagtgtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcg 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31529019 gcgtgagagctgtcctccatccttgcaggacctcagtgtcttgtttgaatctttcctcatgttgggcaaatgcttttttataactcccactttgctttcg 31529118  T
Q  101 cacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529119 cacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagtt 31529218  T
Q  201 gaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529219 gaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttag 31529318  T
Q  301 tgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacac 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31529319 tgtcatctctaaatgcaacaatgcctcttatttggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacac 31529418  T
Q  401 gtcatatgatgattttctg 419  Q
    |||||||||||||||||||    
T  31529419 gtcatatgatgattttctg 31529437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 101 - 406
Target Start/End: Complemental strand, 31489094 - 31488789
Alignment:
Q  101 cacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagtt 200  Q
    |||||| ||||||||||||||||| |||||||| ||||||||| ||||| ||| |||   | | ||||||||||||| |||||| |||||||||||||||    
T  31489094 cacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagtt 31488995  T
Q  201 gaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttag 300  Q
    |||||||||||||| || |||| |||  ||||||||  | ||||  |||| || ||||||| ||| || |||||||| ||||||||||| | ||||||||    
T  31488994 gaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagcttag 31488895  T
Q  301 tgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacac 400  Q
    ||||||||||||| |||| ||||||| || || | ||||| | ||||||||||||||| |||||||| || || ||| | ||||||||| ||| ||||||    
T  31488894 tgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatcttcacctctgaaggtgacaaacac 31488795  T
Q  401 gtcata 406  Q
    ||||||    
T  31488794 gtcata 31488789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 101 - 406
Target Start/End: Original strand, 31030339 - 31030644
Alignment:
Q  101 cacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagtt 200  Q
    |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| |||   ||| | |||||||| |  |||||| |||||||||||||||    
T  31030339 cacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagtt 31030438  T
Q  201 gaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttag 300  Q
    |||||||||||||| || |||| |||  ||||||||  | ||||  |||| || ||||||| ||| || |||| ||| ||||||||||| | ||| ||||    
T  31030439 gaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattag 31030538  T
Q  301 tgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacac 400  Q
    |||| ||||||||||||| ||||||| || || | ||||| | ||||||||||||| |||||||||| || || ||| | ||||| ||| ||| ||||||    
T  31030539 tgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacac 31030638  T
Q  401 gtcata 406  Q
     |||||    
T  31030639 atcata 31030644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 98 - 406
Target Start/End: Original strand, 31150959 - 31151266
Alignment:
Q  98 tcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaa 197  Q
    ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| | ||  ||||| ||| | | |||||| ||||| ||||||    
T  31150959 tcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaa 31151058  T
Q  198 gttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagct 297  Q
      ||||||||||||||| || ||||| || ||||  ||| || ||||| |||| || || |||||||||||||||||||| |||||||||||||| ||||    
T  31151059 actgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagct 31151158  T
Q  298 tagtgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaa 397  Q
    |||| ||||| || |||| || ||||  | || || | ||||| | |||||||||||||||||||||||  ||||| |||   ||||| ||||||| |||    
T  31151159 tagtatcatccctgaatgaaaaaatg-attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaa 31151257  T
Q  398 cacgtcata 406  Q
    |||||||||    
T  31151258 cacgtcata 31151266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 355
Target Start/End: Original strand, 31159801 - 31160114
Alignment:
Q  42 tgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacac 141  Q
    |||| ||||||||| || |||| |||||  |||| |  |||||| ||| |||| | || |||||| |||||||||||||||||||||| |||||||||||    
T  31159801 tgttggaatctttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacac 31159900  T
Q  142 gttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccg 241  Q
    |  ||||||||| |||   ||| ||||||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||||  ||||| |||  |      
T  31159901 gagttccagaaacttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctt 31160000  T
Q  242 agaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttattcggagggcg 341  Q
     |||||||| || ||| ||||||| || |||||||| |||||||||||||| || ||||  ||||| || |||||||| |||||| || || | |||||     
T  31160001 tgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggca 31160100  T
Q  342 gaaaaaagatgatc 355  Q
    | ||||||||||||    
T  31160101 gcaaaaagatgatc 31160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 101 - 406
Target Start/End: Original strand, 31020458 - 31020763
Alignment:
Q  101 cacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagtt 200  Q
    |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| |||   ||| | |||||||| |  |||||| |||||||||||||||    
T  31020458 cacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagtt 31020557  T
Q  201 gaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttag 300  Q
    ||||||| |||||| || |||| |||  ||||||||  | ||||  |||| || ||||||| ||| || |||| ||| ||||||||||| | ||| ||||    
T  31020558 gaggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattag 31020657  T
Q  301 tgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacac 400  Q
     ||| ||||||||||||| ||||||| || || | ||||| | ||||||||||||| |||||||||| || || ||| | ||||| ||| ||| ||||||    
T  31020658 cgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacac 31020757  T
Q  401 gtcata 406  Q
     |||||    
T  31020758 atcata 31020763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 38 - 318
Target Start/End: Complemental strand, 31476572 - 31476292
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    ||||||||||||||| |   |||||||| |||||||||    |||| ||||| ||||||||||||||   |||||||||||||||||||| ||||| |||    
T  31476572 gtcttgtttgaatctgtgtccatgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatcaacatcatagaacacaggtaga 31476473  T
Q  138 acacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaag 237  Q
    |||   |||  |||   ||| || |||   |||||||||| ||||||   |||||||||||||||| |||| ||||| ||||| ||||| |||| ||||     
T  31476472 acatactttttagatgcttgaacacaacacaggatgtattccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaa 31476373  T
Q  238 tccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaa 318  Q
     | ||||  |||| || ||| ||| ||||||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||    
T  31476372 cctgagacccttcaattgcatgaaagagttcaggtgctatggattcacctttttgaagattagtgtcatccctaaatgcaa 31476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 326
Target Start/End: Complemental strand, 31501682 - 31501394
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| |||| |||  ||||||| | |||||||||    |||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||    
T  31501682 gtcttgttggaatatttgttcatgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcaga 31501583  T
Q  138 acacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaag 237  Q
    ||| |||||  ||| |  || ||||| | |||||| | ||  |||||  ||||||||||| ||||||||||||||||  |||||| |||  |||  |||     
T  31501582 acatgttttttagatacgtggacgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaacaaaaa 31501483  T
Q  238 tccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcct 326  Q
    |   |||  |||| || |||||||| || || | |||||| |||||||||||   ||| ||||||||||| |||||||||| |||||||    
T  31501482 tataagaatcttcaattgcacgaagaagctcggatgctatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgcct 31501394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 326
Target Start/End: Complemental strand, 31496512 - 31496224
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||||||||    |||| | ||||||||||||||||||   ||||| |||||||||||||||||||| |||    
T  31496512 gtcttgttggaatctttgttcatgtttgacaaatgcttcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcaga 31496413  T
Q  138 acacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaag 237  Q
    ||| |||||  ||| |  |  || || | |||||| | ||  |||||  |||||||| |||||||| ||||||||||  |||| ||||| ||||  |||     
T  31496412 acatgttttttagataccttgacccattcaaggatcttttctaattcttgcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaa 31496313  T
Q  238 tccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcct 326  Q
     | |||||  ||| || |||| |||||| | |||| |||| |||||||||||   ||| |||||||||||||||||||||  |||||||    
T  31496312 cctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaagattagtgtcatctctaaatgcagaaatgcct 31496224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 266
Target Start/End: Complemental strand, 31482397 - 31482180
Alignment:
Q  52 tttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccaga 151  Q
    |||| ||||||| |||||| |||||   ||||||||||||||||||||| ||||| || ||||  ||||||||||||||||   ||||||||||| | ||    
T  31482397 tttcttcatgtttggcaaaggctttagcataactcccactttgctttcgtacctcagatggattgacatcatagaaaacagtccgaacacgtttttctga 31482298  T
Q  152 aagttgtacgca---atgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggct 248  Q
      ||||   |||   | |||||||||||  |||||| ||||||||||||||||||||||||||  | || || ||||| || |||||| || ||||| ||    
T  31482297 tggttgactgcagtgaagaaggatgtataccaattcacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagact 31482198  T
Q  249 tcgatagcacgaaggagt 266  Q
    || || ||||||| ||||    
T  31482197 tcaattgcacgaaagagt 31482180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 318
Target Start/End: Original strand, 31162245 - 31162455
Alignment:
Q  109 aaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaa--gttgaggaa 206  Q
    ||||||||||||||||||||||||| |||||| |  || | || | ||  | ||| ||||||||| |||  |||||  |||||||||||  |||||||||    
T  31162245 aaggatcaacatcatagaaaacaggcagaacatgcctttcggagactttaatgcagtgaaggatggattctaattcttgcaagcaccaatagttgaggaa 31162344  T
Q  207 gcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcat 306  Q
    |||||||| || || || || ||||||||| || ||||| | ||||| || | |||||| || | | | || ||||||||||| || |||||||  ||||    
T  31162345 gcatagttcttagaaaataccacaatgaaaatcagagagtc-tcgattgctccaaggagctctgatccaatggattcacctttgttgagcttagaatcat 31162443  T
Q  307 ctctaaatgcaa 318  Q
    | ||||||||||    
T  31162444 ccctaaatgcaa 31162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 31244557 - 31244507
Alignment:
Q  90 ctttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaaca 140  Q
    ||||||||||||||||| || ||||| ||||||||||||| ||| ||||||    
T  31244557 ctttgctttcgcacctcagatggatccacatcatagaaaataggtagaaca 31244507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 31163606 - 31163658
Alignment:
Q  89 actttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacac 141  Q
    ||||| |||||||||||| ||| ||||||| |||||||||| ||| |||||||    
T  31163606 actttactttcgcacctcagaaagatcaacttcatagaaaataggcagaacac 31163658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 406
Target Start/End: Original strand, 12781322 - 12781641
Alignment:
Q  87 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtac-gcaatgaaggatgtattgcaattcc 185  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||| |||||  ||||||||     || ||| ||||||||||||||||| ||||||     
T  12781322 ccactttgcttttgtacctcagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttt-tactgcaatgaaggatgtattccaattct 12781420  T
Q  186 cgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcac 285  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||||||| ||  | |||||||||| || || | || |||| | ||||||||  |||| |    
T  12781421 cgcaaacaccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaagagtccgggtgctatgaattcgc 12781520  T
Q  286 ctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctct 385  Q
    |||| ||||| |||||||||||||| ||||||  |||||||| | || | ||||| | | ||| |||||| ||||| ||||| ||||||||||  |||||    
T  12781521 cttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagcgtgtgtctgggcctct 12781620  T
Q  386 gaagctgataaacacgtcata 406  Q
     ||||| | ||||||||||||    
T  12781621 aaagctcacaaacacgtcata 12781641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 406
Target Start/End: Original strand, 12785512 - 12785831
Alignment:
Q  87 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtac-gcaatgaaggatgtattgcaattcc 185  Q
    |||||||||||| | ||||| ||||||||||||||||| |||| ||| ||||   |||||||| |   || ||| ||||||||||||||||| ||||||     
T  12785512 ccactttgcttttgtacctcagaaggatcaacatcataaaaaataggaagaatgtgttttccatattttt-tactgcaatgaaggatgtattccaattct 12785610  T
Q  186 cgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcac 285  Q
    ||||| ||||||||||| ||||||||||| || ||||| ||||||||| ||  | |||||||||| || || | || |||| | ||||||||  ||||||    
T  12785611 cgcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaagagtccgggtgctatgaattcac 12785710  T
Q  286 ctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctct 385  Q
    |||| ||||| |||||||||||||| ||||||  |||||||| | || | ||||| | |||||||||||| ||||| ||||| ||||||||||  |||||    
T  12785711 cttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagcgtgtgtctgggcctct 12785810  T
Q  386 gaagctgataaacacgtcata 406  Q
     ||||| | ||||||||||||    
T  12785811 aaagctcacaaacacgtcata 12785831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 401
Target Start/End: Original strand, 12782073 - 12782387
Alignment:
Q  87 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattccc 186  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||||| | | |     ||| | ||||||||||   ||||| |    
T  12782073 ccactttgctttcgcacctcagaaagatcaacatcataaaaaacaggcagaacgcgttttccatacaatacactgcagttaaggatgtatgctaattctc 12782172  T
Q  187 gcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacc 286  Q
    |||| ||||||||||| ||||||||||| || ||||| ||||||||||||  | ||||| |||| || ||  ||| ||| || | |||||| || | |||    
T  12782173 gcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatggaattacc 12782272  T
Q  287 tttcttaagcttagtgtcatctctaaatgcaacaatgcctcttattcggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctg 386  Q
    ||| | ||| |||||||||||||| |||| || ||| | | || || | |||||   |||||||||||||||||| ||||| ||||||||||  ||||||    
T  12782273 tttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgtgcctctg 12782372  T
Q  387 aagctgataaacacg 401  Q
    ||||| | |||||||    
T  12782373 aagctcacaaacacg 12782387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 9169383 - 9169492
Alignment:
Q  39 tcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaa 138  Q
    |||| |||||||||||  ||||||| |||||||||||    |||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||    
T  9169383 tcttatttgaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaagaagaa 9169482  T
Q  139 cacgttttcc 148  Q
    || |||||||    
T  9169483 catgttttcc 9169492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 317
Target Start/End: Original strand, 33288141 - 33288378
Alignment:
Q  80 ataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgc 179  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||| || ||||   ||||||  || |  || || || | |   || | ||      
T  33288141 ataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaactggaagaatgtgttttcttgatacatgaacacattcacatatcttttct 33288240  T
Q  180 aattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatag 279  Q
    |||||| |||||||||| |||||||||||||||||  ||||||| ||  ||| ||||  | | ||  ||||||| || |||||||| |||||| |||| |    
T  33288241 aattcctgcaagcaccatgttgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatgg 33288340  T
Q  280 attcacctttcttaagcttagtgtcatctctaaatgca 317  Q
    |||||||||| | ||| || |||||||| |||||||||    
T  33288341 attcacctttttgaagattggtgtcatccctaaatgca 33288378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 326
Target Start/End: Original strand, 33307010 - 33307298
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||| ||||    |||| |||||||||||||||| ||| | ||||||||||||||||| |||||||| |||    
T  33307010 gtcttgttggaatctttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatcaacatcataaaaaacaggaaga 33307109  T
Q  138 acacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaag 237  Q
    | | ||||||  ||    || ||||| | |   || |  |  |||||  ||| |||||| |||||||||||||||||  ||||||||||  |||  |||     
T  33307110 atatgttttctggatctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatagttccttgagaagactgcaacaaaaa 33307209  T
Q  238 tccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcct 326  Q
     ||||||  ||||||| || |||||||| |||||| ||||||||||||| || | ||| ||||||||||| | |||||||| |||||||    
T  33307210 cccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaagattagtgtcatcccgaaatgcaaaaatgcct 33307298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 33060079 - 33060189
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||| ||||    |||| | ||||||||||| |||||||| |||||||||||||||||||||||||| |||    
T  33060079 gtcttgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaaga 33060178  T
Q  138 acacgttttcc 148  Q
    ||| |||||||    
T  33060179 acatgttttcc 33060189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 33361022 - 33361132
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||| ||||    |||| || |||||||||| |||||||| |||||||||||||||||||||||||| |||    
T  33361022 gtcttgttggaatctttgttcatgtttgacaaaagcttcactataaatctcactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaaga 33361121  T
Q  138 acacgttttcc 148  Q
    ||| |||||||    
T  33361122 acatgttttcc 33361132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 31566680 - 31566567
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||  ||||||||  ||||||| |||||| ||||    |||| |||||||||||||||| ||||| |||||||||||||||||||||||| | |||    
T  31566680 gtcttgtcggaatctttgttcatgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaaga 31566581  T
Q  138 acacgttttccaga 151  Q
    ||| ||||| ||||    
T  31566580 acatgtttttcaga 31566567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 33390600 - 33390705
Alignment:
Q  41 ttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaaca 140  Q
    ||||| ||||||||  ||||||| | |||| ||||| | |||| | |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||    
T  33390600 ttgttggaatctttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaaca 33390699  T
Q  141 cgtttt 146  Q
     |||||    
T  33390700 agtttt 33390705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 33403184 - 33403243
Alignment:
Q  87 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgtttt 146  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| | |||| |||||    
T  33403184 ccactttgctttcgaacctcagaaggatcaacatcatagaaaacaggaataacatgtttt 33403243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 317
Target Start/End: Original strand, 33412484 - 33412721
Alignment:
Q  80 ataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgc 179  Q
    |||| ||||||||||||| |||||||| |||||||||| |||||| |||||||| |||||  ||||| |||     || || || | |  ||| | ||      
T  33412484 ataaatcccactttgcttccgcacctcagaaggatcaatatcataaaaaacaggaagaacgtgtttttcaggtccctgaacacattcacagatcttttct 33412583  T
Q  180 aattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatag 279  Q
    |||||  ||| |||||| |||||||||||||||||  |||| |||||  | | ||||  | ||||  ||||||| ||||||||||| |||||| ||||      
T  33412584 aattcttgcaggcaccatgttgaggaagcatagttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacgaaggagctcaggtcctatga 33412683  T
Q  280 attcacctttcttaagcttagtgtcatctctaaatgca 317  Q
     ||||||||| ||||| || |||||||| |||||||||    
T  33412684 cttcaccttttttaagatttgtgtcatccctaaatgca 33412721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 33265448 - 33265516
Alignment:
Q  80 ataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttcc 148  Q
    |||| ||||||||||||||| ||| || || |||||||||||||||||||| || |||||| |||||||    
T  33265448 ataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcc 33265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 33274592 - 33274660
Alignment:
Q  80 ataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttcc 148  Q
    |||| ||||||||||||||| ||| || || |||||||||||||||||||| || |||||| |||||||    
T  33274592 ataaatcccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcc 33274660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 33642173 - 33642065
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||| ||||    |||| | |||||||||||||| ||||| ||||||||||||||||| |||| ||| |||    
T  33642173 gtcttgttggaatctttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaaga 33642074  T
Q  138 acacgtttt 146  Q
    ||| |||||    
T  33642073 acatgtttt 33642065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 12786252 - 12786303
Alignment:
Q  87 ccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaa 138  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||| ||||    
T  12786252 ccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 33060228 - 33060266
Alignment:
Q  187 gcaagcaccaagttgaggaagcatagttgtttgagaaga 225  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  33060228 gcaagcaccacgttgaggaagcatagttctttgagaaga 33060266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 17438245 - 17438135
Alignment:
Q  38 gtcttgtttgaatctttcctcatgttgggcaaatgctttttgataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggaga 137  Q
    |||||||| ||||||||  ||||||| | |||| ||||  |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  17438245 gtcttgttggaatctttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaggaaga 17438146  T
Q  138 acacgttttcc 148  Q
    ||| |||||||    
T  17438145 acatgttttcc 17438135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17642155 - 17642115
Alignment:
Q  196 aagttgaggaagcatagttgtttgagaagacaacaatgaaa 236  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17642155 aagttgaggaagcatagttgttagagaaaacaacaatgaaa 17642115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17661024 - 17660984
Alignment:
Q  196 aagttgaggaagcatagttgtttgagaagacaacaatgaaa 236  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17661024 aagttgaggaagcatagttgttagagaaaacaacaatgaaa 17660984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17617203 - 17617163
Alignment:
Q  196 aagttgaggaagcatagttgtttgagaagacaacaatgaaa 236  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  17617203 aagtagaggaagcatagttgttagagaaaacaacaatgaaa 17617163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17698853 - 17698813
Alignment:
Q  196 aagttgaggaagcatagttgtttgagaagacaacaatgaaa 236  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  17698853 aagtagaggaagcatagttgttagagaaaacaacaatgaaa 17698813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17712065 - 17712025
Alignment:
Q  196 aagttgaggaagcatagttgtttgagaagacaacaatgaaa 236  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  17712065 aagtagaggaagcatagttgttagagaaaacaacaatgaaa 17712025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University