View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10442_high_13 (Length: 227)

Name: NF10442_high_13
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10442_high_13
NF10442_high_13
[»] chr6 (3 HSPs)
chr6 (1-98)||(31111368-31111465)
chr6 (162-227)||(31111240-31111305)
chr6 (4-98)||(31057393-31057487)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31111465 - 31111368
Alignment:
Q  1 agggttttttgtgggttctagatttacatattatttcttcaaattttgggttgaagatgaatgttttgagggaagttgatgaaaatatgtaatcttgg 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31111465 agggttttttgtgggttctagatctacatattatttcttcaaatttttggttgaagatgaatgttttgagggaagttgatgaaaatatgtaatcttgg 31111368  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 31111305 - 31111240
Alignment:
Q  162 ataggtttgaagaaaaagaggatgaggaagattaactatgaagatgaatttgaagaaaattattta 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31111305 ataggtttgaagaaaaagaggatgaggaagattgactatgaagatgaatttgaagaaaattattta 31111240  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 31057487 - 31057393
Alignment:
Q  4 gttttttgtgggttctagatttacatattatttcttcaaattttgggttgaagatgaatgttttgagggaagttgatgaaaatatgtaatcttgg 98  Q
    ||||||| |||||||||||| ||  |||| ||||||||| || | ||||||| |||||||||  |||| ||||||||||| ||||||||| ||||    
T  31057487 gttttttatgggttctagatctatgtattctttcttcaatttataggttgaaaatgaatgttaagaggaaagttgatgaagatatgtaatgttgg 31057393  T

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