View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10442_low_10 (Length: 237)
Name: NF10442_low_10
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10442_low_10 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 10736748 - 10736625
Alignment:
| Q |
5 |
caacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatcaataca |
104 |
Q |
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| T |
10736748 |
caacaaataaccccaattgagtttctctccttcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatcccaaatcaataca |
10736649 |
T |
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| Q |
105 |
tttttctcacaaatatccaaatag |
128 |
Q |
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| T |
10736648 |
tttttctcacaaatatccaaatag |
10736625 |
T |
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Target: scaffold0219 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 7236 - 7332
Alignment:
| Q |
36 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaatatccaaatagcca |
131 |
Q |
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| T |
7236 |
tcccttcctgcatcatcattctcttttctcccttccttcaataacacaacaatatccccaaatcaatacccttttttcacaaatacccaaatagcca |
7332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 40110427 - 40110370
Alignment:
| Q |
36 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
93 |
Q |
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| T |
40110427 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccc |
40110370 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 26802998 - 26802914
Alignment:
| Q |
36 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacat-cccaaatcaatacatttttctcacaaata |
119 |
Q |
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| T |
26802998 |
tccctttctgcatcatcattctcttttctcccttcctgcaacaacacagcaacatccccatatcaatactcttttttcacaaata |
26802914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 24516667 - 24516724
Alignment:
| Q |
36 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
93 |
Q |
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| T |
24516667 |
tcccttcctgcatcatcgttctcttttctcccttcctgcaacaacacaacaacatccc |
24516724 |
T |
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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 22620916 - 22620859
Alignment:
| Q |
36 |
tcccttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
93 |
Q |
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| T |
22620916 |
tcccttcctgcataatcattctcttttctcccttcctgcaacaacacagcaacatccc |
22620859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 41348584 - 41348637
Alignment:
| Q |
40 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaccaacatccc |
93 |
Q |
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| T |
41348584 |
ttcctgcatcatcattctcttttctcccttcctgcaacaacacaacaacatccc |
41348637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 11968256 - 11968177
Alignment:
| Q |
54 |
ttctcttttctcccttcctgcaacaacacaccaacatcc-caaatcaatacatttttctcacaaatatccaaatagccag |
132 |
Q |
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|||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |||||| |||| |
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| T |
11968256 |
ttctctcttctcccttcctacaacaacacaacaacatcctcaaatcaatacccttttttcacaaatactcaaataaccag |
11968177 |
T |
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