View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10442_low_2 (Length: 413)
Name: NF10442_low_2
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10442_low_2 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 2997868 - 2997487
Alignment:
| Q |
18 |
catggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2997868 |
catggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtatgct |
2997769 |
T |
|
| Q |
118 |
acgtagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttt |
217 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2997768 |
acgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttt |
2997669 |
T |
|
| Q |
218 |
tataattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaa |
317 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2997668 |
tataattgaacttttcttgagataccactatggtgggtttgtctttgaactttggttcgatgatggtataacaacaaatttaatgttacttgaaaatcaa |
2997569 |
T |
|
| Q |
318 |
cttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatactagtaatcctaacactaggatccctt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
2997568 |
cttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatccctt |
2997487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 2934209 - 2934546
Alignment:
| Q |
21 |
ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacg |
120 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2934209 |
ggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctaca |
2934308 |
T |
|
| Q |
121 |
tagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttat |
220 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
2934309 |
tagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttat |
2934408 |
T |
|
| Q |
221 |
aattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaactt |
320 |
Q |
| |
|
|||| ||||||| | |||| || |||| ||| | ||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
2934409 |
aattcaacttttttggagagactattatgaagggcgtctctttaaacctttgttagatactggtataacagacgatttaatgttacttgaaaatcagctt |
2934508 |
T |
|
| Q |
321 |
ccctttttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934509 |
ccctttttcgttattgaaaaaatttacagtctttcatt |
2934546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 357
Target Start/End: Original strand, 2982494 - 2982818
Alignment:
| Q |
33 |
ctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacgtagattctatat |
132 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||||||||| | |
|
|
| T |
2982494 |
ctccaaaacatggaacgtcagaagctcattcacttcaaagcttttcttcaacgaaccgaggcatctttaaacgacttggtctgctacgtagattctatct |
2982593 |
T |
|
| Q |
133 |
tatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaactttt |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2982594 |
tatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattcaactttt |
2982693 |
T |
|
| Q |
233 |
cttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgtt |
332 |
Q |
| |
|
| |||| | ||||||||| | ||||| ||| |||||| | | |||| | ||| || |||||||||||||||| ||||||||||||||| |
|
|
| T |
2982694 |
ttggagaaaatattatggtggggctctctttcaaccttggttaaaaagtcttatattatatgatgtactgttacttgaaaatcagcttccctttttcgtt |
2982793 |
T |
|
| Q |
333 |
attgaaaaaatttacagtctttcat |
357 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
2982794 |
attgaaaaaatttacagtcgttcat |
2982818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 21 - 358
Target Start/End: Complemental strand, 3004249 - 3003906
Alignment:
| Q |
21 |
ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacg |
120 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
3004249 |
ggtcacccccagctccaaaacatggaaaatcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctaca |
3004150 |
T |
|
| Q |
121 |
tagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttat |
220 |
Q |
| |
|
|||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3004149 |
tagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat |
3004050 |
T |
|
| Q |
221 |
aattgaacttttcttgagacacctctatg---gtgggt---ttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaat |
314 |
Q |
| |
|
|||| ||||||| | |||| || |||| || ||| || ||||| ||| |||||| ||| ||||||||| || |||||| ||||||||||||| |
|
|
| T |
3004049 |
aattcaacttttttggagatactattatgatcgtcggtgcattctctttaaaccttggttagataatggtataagaaacgatttatggttacttgaaaat |
3003950 |
T |
|
| Q |
315 |
caacttccctttttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003949 |
cagcttccctttttcgttattgaaaaaatttacagtctttcatt |
3003906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 2926770 - 2927107
Alignment:
| Q |
21 |
ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacg |
120 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||||||||| |||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
2926770 |
ggtcaaccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtcggctaca |
2926869 |
T |
|
| Q |
121 |
tagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttat |
220 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2926870 |
tagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttat |
2926969 |
T |
|
| Q |
221 |
aattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaactt |
320 |
Q |
| |
|
|||| ||||||| | || | | || | |||| | ||||| ||| |||||| ||| ||||||||| | |||||| ||||||||||||||| ||| |
|
|
| T |
2926970 |
aattcaacttttttggacatcctattacgaagggtgtctctttaaaccttggttagataatggtataagacacgatttatggttacttgaaaatcagctt |
2927069 |
T |
|
| Q |
321 |
ccctttttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927070 |
ccctttttcgttattgaaaaaatttacagtctttcatt |
2927107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 2951549 - 2951889
Alignment:
| Q |
18 |
catggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgct |
117 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||||||| ||||||| | |||||||||| |||| ||||||||||||| |||||||| || |
|
|
| T |
2951549 |
catggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagttgtct |
2951648 |
T |
|
| Q |
118 |
acgtagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttt |
217 |
Q |
| |
|
|| |||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
2951649 |
acatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttt |
2951748 |
T |
|
| Q |
218 |
tataattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaa |
317 |
Q |
| |
|
||||||| ||||||| | || | | |||| ||| ||||| ||| |||||| | | |||||||| | |||||| ||||||||||||||| |
|
|
| T |
2951749 |
tataattcaacttttttggacatcctgttatgaaggggagctctttaaaccttggttaggtactggtataatacacgatttatggttacttgaaaatcag |
2951848 |
T |
|
| Q |
318 |
cttccctttttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951849 |
cttccctttttcgttattgaaaaaatttacagtctttcatt |
2951889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 2659462 - 2659091
Alignment:
| Q |
30 |
cagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacgtagattcta |
129 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||| | ||||||||| | ||| ||| || || || | |||| |
|
|
| T |
2659462 |
cagctccaaaacatggaacgtcacaaactcatttacttgaaagcttttctccaacgaaccaatgcatgtttagacaccttggtcagcaacataaaatcta |
2659363 |
T |
|
| Q |
130 |
tattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaact |
229 |
Q |
| |
|
|||||| ||||||| | |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
2659362 |
acttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaact |
2659263 |
T |
|
| Q |
230 |
tttcttgagacacctctatggtg---ggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttcccttt |
326 |
Q |
| |
|
||| | || | || |||| || ||||| | ||| ||| |||||| |||||||||||| || ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2659262 |
tttttggacatactattatgatgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttcccttt |
2659163 |
T |
|
| Q |
327 |
ttcgttattgaaaaaatttacagtctttcattcagttctacaaatactagtaatcctaacactaggatccct |
398 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||||| |||| ||||||| |
|
|
| T |
2659162 |
ttcgttattgaagaaatttacaaactttcatcgagttctacaaatgctagtgttcctaagactacgatccct |
2659091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 2964111 - 2964309
Alignment:
| Q |
34 |
tccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacgtagattctatatt |
133 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||| || |||||| || | |||| |||| ||||| |||| || |
|
|
| T |
2964111 |
tccaaaacatggaacgacaaaaactcatttacttcaaagattttctccaacgaaccgagacaactttaaacgaaatggtctactacatagatgctatctt |
2964210 |
T |
|
| Q |
134 |
atctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaactttt |
232 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||||| | ||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2964211 |
atctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggttttataattgaactttt |
2964309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 126 - 358
Target Start/End: Original strand, 2973728 - 2973960
Alignment:
| Q |
126 |
tctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattg |
225 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||||| ||||||||| || || ||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
2973728 |
tctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataattg |
2973827 |
T |
|
| Q |
226 |
aacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaacttccctt |
325 |
Q |
| |
|
||| ||| |||||| | | || || | |||| ||| |||||| || ||| |||| || |||||||| |||||||||||||||| |||||||| |
|
|
| T |
2973828 |
aacatttattgagatcctgttgtgaaggtgatctcttaaaaccttggttatataatgatatatcatcagatttattgttacttgaaaatcagcttccctt |
2973927 |
T |
|
| Q |
326 |
tttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
2973928 |
tttcgttattgaaaaaatttacagtatttcatt |
2973960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 2964370 - 2964491
Alignment:
| Q |
281 |
tggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatactagtaat |
380 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
2964370 |
tggtataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgtt |
2964469 |
T |
|
| Q |
381 |
cctaacactaggatcccttctt |
402 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
2964470 |
cctaacactaacatcccttctt |
2964491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 2972619 - 2972669
Alignment:
| Q |
30 |
cagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctc |
80 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
2972619 |
cagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctc |
2972669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 3338807 - 3339002
Alignment:
| Q |
37 |
aaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacgtagattctatattatc |
136 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||| ||||| ||| | |
|
|
| T |
3338807 |
aaaacatggaacgtcacaaactcatttacttcaaagcttttctccaacgaaccgaggcatgtttaaaagacttggtcttctacgtagagtctatcttacc |
3338906 |
T |
|
| Q |
137 |
tgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattccggttttataattgaactttt |
232 |
Q |
| |
|
|||||||||||| |||||||| ||| |||| |||||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3338907 |
tgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatcgattccggttttataattcaactttt |
3339002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 3339039 - 3339091
Alignment:
| Q |
281 |
tggtataacaacagatttaatgttacttgaaaatcaacttccctttttcgtta |
333 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
3339039 |
tggtatatcatcagatttattgttacttgaaaatcagcttccctttttcgtta |
3339091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 371
Target Start/End: Complemental strand, 35695 - 35345
Alignment:
| Q |
21 |
ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtctgctacg |
120 |
Q |
| |
|
||||| || |||||| |||||||||||| ||| ||||||||| ||||||||| ||||||||||||||| | |||| ||||| ||| || || || |
|
|
| T |
35695 |
ggtcacccccagctcaaaaacatggaacgtcacaaactcatttacttcaaagattttctccaacgaaccaatgcatctttaagcatcttgatcagcgaca |
35596 |
T |
|
| Q |
121 |
tagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgta---cttgttaagttaatcttaatcgattccggttt |
217 |
Q |
| |
|
|| ||||||| ||||||||||||||| | |||||||| ||||||||| ||||| ||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
35595 |
tatattctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttt |
35496 |
T |
|
| Q |
218 |
tataattgaacttttcttgagacacctctatggtgggtttgtctttgaactttggttcgatgatggtataacaacagatttaatgttacttgaaaatcaa |
317 |
Q |
| |
|
||||||| ||||||| | || | | | || | | ||| | | |||| |||||| |||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
35495 |
tataattcaacttttttggaaatattt-taagaaagattt--cctagaaccttggttagatgctggtataagatcagatttattgttacttgaaaatcag |
35399 |
T |
|
| Q |
318 |
cttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
35398 |
cttccctttttcgttattgaaaaaatttacggtctttcgtggagttctacaaat |
35345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 49618096 - 49618223
Alignment:
| Q |
112 |
tctgctacgtagattctatattatctgatttcaaacgctgttattctgaaaccctaccattttctcgtaatgtacttgttaagttaatcttaatcgattc |
211 |
Q |
| |
|
|||||||| ||||||| || |||||| ||||||| | || |||||| ||||||||| |||| ||| | ||| | ||||||||||||||||||| ||||| |
|
|
| T |
49618096 |
tctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattc |
49618195 |
T |
|
| Q |
212 |
cggttttataattgaacttttcttgaga |
239 |
Q |
| |
|
||| || |||||||| ||||||| |||| |
|
|
| T |
49618196 |
cgggttcataattgagcttttctggaga |
49618223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 49613037 - 49613092
Alignment:
| Q |
33 |
ctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaac |
88 |
Q |
| |
|
|||||||||||||| | || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49613037 |
ctccaaaacatggagcgccacaaactcatttacttcaaagcttttctccaacgaac |
49613092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 49618306 - 49618361
Alignment:
| Q |
303 |
ttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcatt |
358 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
49618306 |
ttacttcaaaatcagcttccctatttcgttattgaaaatatttacattctttcatt |
49618361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 49613323 - 49613389
Alignment:
| Q |
301 |
tgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctac |
367 |
Q |
| |
|
||||||||||||||||| | || ||||| |||||| || ||||||||| ||||||||| | |||||| |
|
|
| T |
49613323 |
tgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctac |
49613389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 49613190 - 49613243
Alignment:
| Q |
186 |
cttgttaagttaatcttaatcgattccggttttataattgaacttttcttgaga |
239 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||| |||||||| ||||||| |||| |
|
|
| T |
49613190 |
cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggaga |
49613243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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