View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10442_low_3 (Length: 390)
Name: NF10442_low_3
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10442_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 25352539 - 25352245
Alignment:
| Q |
1 |
aaaaagaagacgcgatgcatgttataagaagacagaagaattagagcaacgacaaccagaagtgcttgttgatggaaagcctctcaaccataatcaagaa |
100 |
Q |
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| T |
25352539 |
aaaaagaagacgcgatgcatgttataagaagacagaagaattagagcaacaacaaccagaagtgcttgttgatggagagcctctcaaccataatcaagaa |
25352440 |
T |
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| Q |
101 |
gtatctgccgatgacgatatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgcttaccctaacccgcctgtac |
200 |
Q |
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| T |
25352439 |
gtatctgccgatgacgatatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgctgaccctaacccgcctgtac |
25352340 |
T |
|
| Q |
201 |
catcttatgtgagtcttcatatcttcattttatttcaattcttagttactta----ataatgtactttctgtaacacatctcttggatattgtag |
291 |
Q |
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| T |
25352339 |
catcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaatatataatgtactttctgtaacacatctcttggatattgtag |
25352245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 25357198 - 25356914
Alignment:
| Q |
7 |
aagacgcgatgcatgttataagaagacagaagaattagagcaacgacaaccagaagtgcttgttgatggaaagcctctcaaccataatcaagaagtatct |
106 |
Q |
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| T |
25357198 |
aagacgcgatgcatgttataagattaccaaagaattagatcaacaacaaccagaagtgcttgttgatggagagcctctcaaccagaatgaaaaagtgtct |
25357099 |
T |
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| Q |
107 |
gccgatgacgatatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgcttaccctaacccgcctgtaccatctt |
206 |
Q |
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| T |
25357098 |
gctgatggaaatatgtcggctaaaaacacgtttgtggagccgatttctgtagtgaaccttgtaccaacaactgctgaccctaac---cctttaccatctt |
25357002 |
T |
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| Q |
207 |
atgtgagtcttcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
291 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||||| |
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| T |
25357001 |
atgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 25349805 - 25349711
Alignment:
| Q |
198 |
taccatcttatgtgagtcttcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgt |
289 |
Q |
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| T |
25349805 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 25352211 - 25352164
Alignment:
| Q |
325 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttg |
372 |
Q |
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| T |
25352211 |
ttggatttatagaaggtaaggaggactagtaatagattgagaaccttg |
25352164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 25361677 - 25361580
Alignment:
| Q |
194 |
cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
291 |
Q |
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|||||||||||| ||||||| || | |||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||| ||||||||||||| |
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| T |
25361677 |
cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
25361580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 25349672 - 25349625
Alignment:
| Q |
325 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttg |
372 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
25349672 |
ttggatttaaagatggtgaggaggactagtaatagattgagaaccttg |
25349625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 25356880 - 25356833
Alignment:
| Q |
325 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttg |
372 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
25356880 |
ttggatttaaaggtggtgaggaggactagtaatagattgagaaccttg |
25356833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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