View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10442_low_4 (Length: 299)

Name: NF10442_low_4
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10442_low_4
NF10442_low_4
[»] chr7 (1 HSPs)
chr7 (1-292)||(41929448-41929739)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 41929448 - 41929739
Alignment:
Q  1 agaactttgagaatatcatcagcaccactgaaagtaaaagcaccaccttcctccaaattgaaaagcttaacaacaccatcttcagccaacaaagcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41929448 agaactttgagaatatcatcagcaccactgaaagtaaaagcaccaccttcctccaaattgaaaagcttaacaacaccatcttcagccaacaaagcataac 41929547  T
Q  101 gtcttgacctaacacccaatccaacaggtttatcactcaaatcaagctcaacaccaattgctttcgtgaaatcaccattcccatcagacaaaagcaccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41929548 gtcttgacctaacacccaatccaacaggtttatcactcaaatcaagctcaacaccaattgctttcgtgaaatcaccattcccatcagacaaaagcaccac 41929647  T
Q  201 ttcatcattcaccttcaaatcctccttccacgctttcatcacgaacgcatcgttcaccgaaatgcaagcgatggtgtcaattccctttgctt 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41929648 ttcatcattaaccttcaaatcctccttccacgctttcatcacgaacgcatcgttcaccgaaatgcaagcgatggtgtcaattcccttcgctt 41929739  T

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