View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10442_low_6 (Length: 251)
Name: NF10442_low_6
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10442_low_6 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 25180172 - 25180413
Alignment:
| Q |
10 |
gcacagaccagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25180172 |
gcacagaccagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
25180271 |
T |
|
| Q |
110 |
ttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccattt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25180272 |
ttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccattt |
25180371 |
T |
|
| Q |
210 |
gcatatccattttgactgtaactccatggctcattcaaagtt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25180372 |
gcatatccattttgactgtaactccatggctcattcaaagtt |
25180413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 25168513 - 25168745
Alignment:
| Q |
19 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25168513 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
|
| Q |
119 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| | ||||||||||| ||| |
|
|
| T |
25168613 |
tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcataccca |
25168712 |
T |
|
| Q |
219 |
ttttgactgtaactccatggctcattcaaagtt |
251 |
Q |
| |
|
| |||||||||| ||||||| |||||||||||| |
|
|
| T |
25168713 |
tcttgactgtaagtccatggttcattcaaagtt |
25168745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 25252753 - 25252521
Alignment:
| Q |
19 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25252753 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
|
| Q |
119 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||| ||| |
|
|
| T |
25252653 |
tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcataccca |
25252554 |
T |
|
| Q |
219 |
ttttgactgtaactccatggctcattcaaagtt |
251 |
Q |
| |
|
| |||||||||| ||||||| |||||||||||| |
|
|
| T |
25252553 |
tcttgactgtaagtccatggttcattcaaagtt |
25252521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 25159966 - 25160183
Alignment:
| Q |
33 |
gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag |
132 |
Q |
| |
|
||||| ||||| | |||||||||||| ||| ||| || |||||||||||| ||| ||||| ||||| || |||||||| ||||||| || ||||| | |
|
|
| T |
25159966 |
gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg |
25160065 |
T |
|
| Q |
133 |
gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaact |
232 |
Q |
| |
|
| ||| | ||||||||||||| || ||||| ||||| |||||| ||||| ||||| ||||||||| ||||||||||| |||||||| || || || |
|
|
| T |
25160066 |
gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagct |
25160165 |
T |
|
| Q |
233 |
ccatggctcattcaaagt |
250 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
25160166 |
ccatggctcgttcaaagt |
25160183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 9213949 - 9213762
Alignment:
| Q |
63 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat |
162 |
Q |
| |
|
||||| || |||||||||||||| |||||| | ||||||||||||||||| || |||| |||| ||| || || | |||||||||| |||||||||| |
|
|
| T |
9213949 |
tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat |
9213850 |
T |
|
| Q |
163 |
tgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggctcattcaaagt |
250 |
Q |
| |
|
| ||||| |||||| ||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9213849 |
ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagt |
9213762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
| Q |
63 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca |
160 |
Q |
| |
|
|||||||| |||||||| || | |||||| ||||||||||| || ||| | | ||||||||||||||| || || || || |||||||| |||||||| |
|
|
| T |
30361145 |
tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca |
30361048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University