View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10442_low_7 (Length: 247)
Name: NF10442_low_7
Description: NF10442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10442_low_7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 25180976 - 25180747
Alignment:
| Q |
18 |
ggatgcatacagattttccatatcttggtctagaatactcccaagtaagtcaattttataccaatagactattctcaattaaacttagtttcttttcacc |
117 |
Q |
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| T |
25180976 |
ggatgcatacagattttccatatcttggtctagaatactcccaagtaagtcaattttataccaatagactattctcaattaaacttagtttcttttcacc |
25180877 |
T |
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| Q |
118 |
aaccatatannnnnnnnataatttatgcagaaggaaaactaagtggaggaattaatcaagaaggaattgactattacaataatctcatagatgaattggt |
217 |
Q |
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| T |
25180876 |
aaccatatattttttttattatttatgcagaaggaaaactaagtggaggaattaatcaagaaggaattgactattacaataatctcattgatgaattggt |
25180777 |
T |
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| Q |
218 |
gacaaatggtaagaatataaacttcatttt |
247 |
Q |
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| T |
25180776 |
gacaaatggtaagaatataaacttcatttt |
25180747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 25169139 - 25169045
Alignment:
| Q |
153 |
aaactaagtggaggaattaatcaagaaggaattgactattacaataatctcatagatgaattggtgacaaatggtaagaatataaacttcatttt |
247 |
Q |
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| T |
25169139 |
aaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaagaatacaaacttcatttt |
25169045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 25252115 - 25252209
Alignment:
| Q |
153 |
aaactaagtggaggaattaatcaagaaggaattgactattacaataatctcatagatgaattggtgacaaatggtaagaatataaacttcatttt |
247 |
Q |
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| T |
25252115 |
aaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaagaatacaaacttcatttt |
25252209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 25169188 - 25169146
Alignment:
| Q |
18 |
ggatgcatacagattttccatatcttggtctagaatactccca |
60 |
Q |
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| T |
25169188 |
ggatgcatacagattttccatatcttggtctagaatactccca |
25169146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 25252066 - 25252108
Alignment:
| Q |
18 |
ggatgcatacagattttccatatcttggtctagaatactccca |
60 |
Q |
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| T |
25252066 |
ggatgcatacagattttccatatcttggtctagaatactccca |
25252108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 25160771 - 25160726
Alignment:
| Q |
23 |
catacagattttccatatcttggtctagaatactcccaagtaagtc |
68 |
Q |
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| T |
25160771 |
catacagattctccatatcctggtctagaatattgccaagtaagtc |
25160726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 29422228 - 29422276
Alignment:
| Q |
18 |
ggatgcatacagattttccatatcttggtctagaatactcccaagtaag |
66 |
Q |
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| T |
29422228 |
ggatgcttatagattttccatctcttggtccagaatacttccaagtaag |
29422276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 30360293 - 30360341
Alignment:
| Q |
19 |
gatgcatacagattttccatatcttggtctagaatactcccaagtaagt |
67 |
Q |
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| T |
30360293 |
gatgcatatagattatccatctcatggtctagaatactaccaagtaagt |
30360341 |
T |
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