View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10443_low_10 (Length: 250)
Name: NF10443_low_10
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4788886 - 4789112
Alignment:
| Q |
1 |
accgttggagctagatagcttgagctagaagcaatcnnnnnnnnnnnnnnnnnatgcattcctttggttgttaaattgctagaatgaaatcagtttcaag |
100 |
Q |
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| T |
4788886 |
accgttggagctagatagcttgagctagaagcaatcatatatataaatatataatgcattcctttggttgttaaattgctagaatgaaatcagtttcaag |
4788985 |
T |
|
| Q |
101 |
tctaacaaacacatagagtaaaaagagtgacaaaacaagagtgaattatggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
4788986 |
tctaacaaacacatagagtaaaa-gagtgacaaaacaagagtgaattctggcgagtttgttgcgagaatgagtcttaagctttgtgatttcacaccattg |
4789084 |
T |
|
| Q |
201 |
taaacgttgattcatagtggagtttttg |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
4789085 |
taaacgttgattcatagtggagtttttg |
4789112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 20724414 - 20724519
Alignment:
| Q |
122 |
aaagagtgacaaaacaagagtgaattatggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattgtaaacgttgattcatagtgga |
221 |
Q |
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||||||||| |||||| ||||||| | | | ||||||| || || ||||||||| ||| |||| |||| |||||| ||||| | ||||||| ||||||| |
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| T |
20724414 |
aaagagtga-aaaacaggagtgaaatctagtgagtttggtgagataatgagtctcaagtcttgtgatttcacaccagtgtaagcattgattcgtagtgga |
20724512 |
T |
|
| Q |
222 |
gtttttg |
228 |
Q |
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||||||| |
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| T |
20724513 |
gtttttg |
20724519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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