View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10443_low_11 (Length: 230)
Name: NF10443_low_11
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_11 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4787415 - 4787644
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4787415 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
4787514 |
T |
|
| Q |
101 |
ttgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4787515 |
ttgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatcttgatgttgttttgaaat |
4787614 |
T |
|
| Q |
201 |
gttagattccctattcaaatttgtaagcat |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
4787615 |
gttagattccctattctaatttgtaagcat |
4787644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4782669 - 4782769
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||||| |||||||||||||||||||| |
|
|
| T |
4782669 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
4782768 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
4782769 |
t |
4782769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University