View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10443_low_2 (Length: 593)
Name: NF10443_low_2
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 35159296 - 35159663
Alignment:
| Q |
19 |
tgaacatctttcaacctttcccactcattatgaaatcttctaagtcccgaccaagtaactcacctaacaactcaacgtcgtcttctttggacaatggcga |
118 |
Q |
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| T |
35159296 |
tgaacatctttcaacctttcccactcattatgaaatcttctaagtcccgaccaagtaactcacctaacaactcaacgtcgtgttctttggacaatggcga |
35159395 |
T |
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| Q |
119 |
agaatgtttcatcaacctactgtggataggcaagtgcaacaaacatgacatgtcatctactgtgatggttatctcatcaatggaaaaatgaaaactacta |
218 |
Q |
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| T |
35159396 |
agaatgtttcatcaacctactgtggataggcaagtgcaacaaacatgacatgtcatctactgtgatggttatctcatcaatggaaaaatgaaaattacta |
35159495 |
T |
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| Q |
219 |
ctctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatcaagttgagaaaaactcgaagcatgtactacatcccaaaacaat |
318 |
Q |
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| T |
35159496 |
ctctctttgtgtgtgaatgatgtacataggcttgaatatgaccgtaggagtattatcaagttgagaaaaactcgaagcatgtactacatcccaaaacaat |
35159595 |
T |
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| Q |
319 |
atatgttactgtgatggtttattgagtttgatggttgatgcatttgagacatggtttctcaggtgctt |
386 |
Q |
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| T |
35159596 |
atatgttattttgatggtttattgagtttgatggttgatgcatttgagacatggtttctcacgtgctt |
35159663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 460 - 583
Target Start/End: Original strand, 35159737 - 35159863
Alignment:
| Q |
460 |
ttacttatgcaatcaatatcaaattcagcggtagtggtttatgagaagaacca---ccaccaaatctcatatcaactttgtccggtggtggtgatgtgtc |
556 |
Q |
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| T |
35159737 |
ttacttatgcaatcaatatcaaattcagcggcagtggtttatcagaagaaccaccaccaccaaatctcatatcaactttgtcccgtggtggtgatgtgtc |
35159836 |
T |
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| Q |
557 |
ttatgacggaacatgtgacaacctatg |
583 |
Q |
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| T |
35159837 |
ttatggcggaacatgtgacaatctatg |
35159863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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