View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10443_low_3 (Length: 526)
Name: NF10443_low_3
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 116 - 511
Target Start/End: Complemental strand, 31114667 - 31114271
Alignment:
| Q |
116 |
gtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggatc |
215 |
Q |
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| T |
31114667 |
gtccatgaatcgaccaaagtgaacccagttcactgtgtttctgggatacaagcttctatcatcaatgcagataatggagagtgagtggcataatgggacc |
31114568 |
T |
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| Q |
216 |
cacctctttgaatggacattggttctaaa-gctcatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatgcatg |
314 |
Q |
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| T |
31114567 |
caactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtgggtaaccatctcgtctaggaagttgttgatgatgcatg |
31114468 |
T |
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| Q |
315 |
cttttttgtactcataatataactcttacttgcaaaacaagtcgccaattttttaacgaaccattggttcctgtttgtttgaagctttgggtgggagaag |
414 |
Q |
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| T |
31114467 |
cttttatgtactcataatataactcttacttgcaaaacaagtcaccaattttttaacgaaccatttgttcctgtttgtttgaagctttgggtgggagaag |
31114368 |
T |
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| Q |
415 |
ttgttgagagtatctactgtcagcggccaccgtgtcagtggtgtttgtttgaacttgaggaagtggaagaagaatgatagagctttgcgaagttcct |
511 |
Q |
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| T |
31114367 |
ttgttgagagtatctactgtcagcggccactgtgtcagtggcgtttgtttgaacttgaggaagtggaagaagaatgatagagctttgcgaagttcct |
31114271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31114728 - 31114681
Alignment:
| Q |
1 |
ccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
48 |
Q |
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| T |
31114728 |
ccaaggatagataaagatgacgtcgttttgatgcttcaacccatttat |
31114681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 31088611 - 31088499
Alignment:
| Q |
89 |
ttgagagtgggggttgaacataattgcgtccatgaatcgtccaaagtgaacccagttcactgtgtttatgggatacaagcttctatcatcaatgcagata |
188 |
Q |
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| T |
31088611 |
ttgagagtgtgggttgaacataattgtatccacgaatcaacgaaagtgaacccacttctctgtgtttctttgatagaagcttatatcatcaaagcggaca |
31088512 |
T |
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| Q |
189 |
atggagagtgagt |
201 |
Q |
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| T |
31088511 |
acagagagtgagt |
31088499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 31088340 - 31088287
Alignment:
| Q |
382 |
ttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtc |
435 |
Q |
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| T |
31088340 |
ttcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtc |
31088287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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