View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10443_low_6 (Length: 453)

Name: NF10443_low_6
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10443_low_6
NF10443_low_6
[»] chr3 (3 HSPs)
chr3 (15-442)||(50829170-50829597)
chr3 (15-442)||(50846256-50846683)
chr3 (379-442)||(25434446-25434508)
[»] chr7 (2 HSPs)
chr7 (57-146)||(43070578-43070666)
chr7 (200-241)||(43070515-43070556)
[»] chr5 (5 HSPs)
chr5 (49-146)||(30441741-30441837)
chr5 (57-146)||(9044641-9044728)
chr5 (77-146)||(7472704-7472772)
chr5 (200-241)||(7472641-7472682)
chr5 (200-241)||(9044750-9044791)
[»] chr2 (4 HSPs)
chr2 (57-146)||(18354503-18354591)
chr2 (57-146)||(23348176-23348264)
chr2 (57-146)||(12742526-12742614)
chr2 (200-241)||(23348113-23348154)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Complemental strand, 50829597 - 50829170
Alignment:
Q  15 gatacaaccttttacttgctagattgacatgtagtttatttggcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50829597 gatacaaccttttacttgctagattgacatgtagtttatttggcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttgg 50829498  T
Q  115 tggtttcgggctgctatcatggtgctgttggctgctgtcttggtgctatcatagtcctgttggcggctctcttgctggtttcgattgctggctggcatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50829497 tggtttcgggctgctatcatggtgctgttggctgctgtcttggtgctatcatagtcctgttggcggctctcttgctggtttcgattgctggctggcatct 50829398  T
Q  215 agagggttggcggttgcagctatttggctgttttctgcggctgtcagctgggttagcagctactgtccaccgtttttctgctannnnnnngggtgctttg 314  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  50829397 agagggttggcggttgcagctgtttggctgttttctgcggctgtcagctgggttagcagctactgtccaccgtttttctgctatttttttgggtgctttg 50829298  T
Q  315 ctgcactagggggctggttgttgcacatgttgcgtttagggacaactcacatttttggttgttggttttaatgaaacctacaacccatttttagttaagt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50829297 ctgcactagggggctggttgttgcacatgttgcgtttagggacaactcacatgtttggttgttggttttaatgaaacctacaacccatttttagttaagt 50829198  T
Q  415 tttgatgaaaaatctaatgcctcttcat 442  Q
    ||||||||||||||||||||||||||||    
T  50829197 tttgatgaaaaatctaatgcctcttcat 50829170  T

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Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 50846256 - 50846683
Alignment:
Q  15 gatacaaccttttacttgctagattgacatgtagtttatttggcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50846256 gatacaaccttttacttgctagattgacatgtagtttatttggcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttgg 50846355  T
Q  115 tggtttcgggctgctatcatggtgctgttggctgctgtcttggtgctatcatagtcctgttggcggctctcttgctggtttcgattgctggctggcatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50846356 tggtttcgggctgctatcatggtgctgttggctgctgtcttggtgctatcatagtcctgttggcggctctcttgctggtttcgattgctggctggcatct 50846455  T
Q  215 agagggttggcggttgcagctatttggctgttttctgcggctgtcagctgggttagcagctactgtccaccgtttttctgctannnnnnngggtgctttg 314  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  50846456 agagggttggcggttgcagctgtttggctgttttctgcggctgtcagctgggttagcagctactgtccaccgtttttctgctatttttttgggtgctttg 50846555  T
Q  315 ctgcactagggggctggttgttgcacatgttgcgtttagggacaactcacatttttggttgttggttttaatgaaacctacaacccatttttagttaagt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50846556 ctgcactagggggctggttgttgcacatgttgcgtttagggacaactcacatgtttggttgttggttttaatgaaacctacaacccatttttagttaagt 50846655  T
Q  415 tttgatgaaaaatctaatgcctcttcat 442  Q
    ||||||||||||||||||||||||||||    
T  50846656 tttgatgaaaaatctaatgcctcttcat 50846683  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 25434446 - 25434508
Alignment:
Q  379 gttttaatgaaacctacaacccatttttagttaagttttgatgaaaaatctaatgcctcttcat 442  Q
    ||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  25434446 gttttgatgaaacctacaaaccgtttt-agttaagttttgatgaaaaatctaatgcctcttcat 25434508  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 43070666 - 43070578
Alignment:
Q  57 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| ||||||||||||||||    
T  43070666 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggc 43070578  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 43070556 - 43070515
Alignment:
Q  200 tgctggctggcatctagagggttggcggttgcagctatttgg 241  Q
    |||||||| ||||||| ||||||||||||||||||| |||||    
T  43070556 tgctggctagcatctatagggttggcggttgcagctgtttgg 43070515  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 30441837 - 30441741
Alignment:
Q  49 tttatttggcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    ||||||| | |||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |||| |||||||| |||||||    
T  30441837 tttattttgtgcgggttctgctgtcattttgggagcttttctggtggt-gttgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggc 30441741  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 9044641 - 9044728
Alignment:
Q  57 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||||| | ||||||||||||||| |||||||||||| || |||||||| ||||||||||||| || |||| ||||||||||||||||    
T  9044641 gcgcgggttctgctgtcattttgggagcttttctggtgg-tgctgtgcagg-ttttggtggtttcagggtgctgtcatggtgctgttggc 9044728  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 7472772 - 7472704
Alignment:
Q  77 ttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||| ||||||||||||| | |||||||||||||||||||||| || |||| ||||||||||||||||    
T  7472772 ttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggc 7472704  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 7472682 - 7472641
Alignment:
Q  200 tgctggctggcatctagagggttggcggttgcagctatttgg 241  Q
    |||||||| ||||||| ||||||||||||||||||| |||||    
T  7472682 tgctggctagcatctatagggttggcggttgcagctgtttgg 7472641  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 9044750 - 9044791
Alignment:
Q  200 tgctggctggcatctagagggttggcggttgcagctatttgg 241  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  9044750 tgctggctggcatctatagggttagcggttgcagctgtttgg 9044791  T

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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 18354591 - 18354503
Alignment:
Q  57 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| ||||||||||||||||    
T  18354591 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggc 18354503  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 23348264 - 23348176
Alignment:
Q  57 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| ||||||||||||||||    
T  23348264 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggc 23348176  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 12742526 - 12742614
Alignment:
Q  57 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 146  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || || | ||||||||||||||||    
T  12742526 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgttgtcatggtgctgttggc 12742614  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 23348154 - 23348113
Alignment:
Q  200 tgctggctggcatctagagggttggcggttgcagctatttgg 241  Q
    |||||||| ||||||| ||||||||||||||||||| |||||    
T  23348154 tgctggctagcatctatagggttggcggttgcagctgtttgg 23348113  T

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