View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10443_low_7 (Length: 383)
Name: NF10443_low_7
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 38930947 - 38930584
Alignment:
| Q |
18 |
acatacaggaaaatatgtttcaatgataggttctactgg-catcaacctgaggttacaacaaccgatgtaatgaatttgaaacaagagggatgaatcagc |
116 |
Q |
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| T |
38930947 |
acatacaggagaatatgtttcaatgataggttctactgggcatcaacctgaggttacaacaaccgatgtaatgaatttgaaacaagagggatgaatcagc |
38930848 |
T |
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| Q |
117 |
tacgaacttcatcgaaaggttccgaaggacggccggaaaatgttcataccaatttcgtaatgtgaatatacatcaattgagttaaactccatatggaaat |
216 |
Q |
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| T |
38930847 |
tacgaacttcatcgaaaggttcagaaggacggctggaaaatgttcataccaatttcgtaatgtgaatatacattaattgagttaaactccatatggaaat |
38930748 |
T |
|
| Q |
217 |
atataaaataatgtacttttagagtctcataacaatgatctataaatgtttgatagaattaaaataccatagattgtgtcataagattgtgcaacttgtt |
316 |
Q |
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| T |
38930747 |
atataaaataatgtacttttagagtctcataacaatgatctataaatgtttgatagaattaaaataccatagattgtgtcataagattgtgcaacttgtt |
38930648 |
T |
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| Q |
317 |
ggctatatacgattcatgcttgcatgaaattattcttgaagtaaatatgactatattcatctca |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38930647 |
ggctatatacgattcatgcttgcatgaaattattcttgaagtaaataagactatattcatctca |
38930584 |
T |
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