View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10443_low_9 (Length: 275)
Name: NF10443_low_9
Description: NF10443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10443_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 34819913 - 34819671
Alignment:
| Q |
18 |
catcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcg |
117 |
Q |
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| T |
34819913 |
catcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcg |
34819814 |
T |
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| Q |
118 |
gcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactc |
217 |
Q |
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| T |
34819813 |
gcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactc |
34819714 |
T |
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| Q |
218 |
caatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
260 |
Q |
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| T |
34819713 |
caatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
34819671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 34820189 - 34820119
Alignment:
| Q |
18 |
catcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
88 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| | | ||||||||| |
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| T |
34820189 |
catcaactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
151 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
214 |
Q |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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