View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10444_high_5 (Length: 307)

Name: NF10444_high_5
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10444_high_5
NF10444_high_5
[»] chr3 (1 HSPs)
chr3 (14-307)||(53661906-53662199)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 53662199 - 53661906
Alignment:
Q  14 aatagaggattatttatgtaatatttgggtgcgaatccagaagcagtctcagttgaaagaaaatggcagtcctcctcttgcaaagcttgcagagcaagag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53662199 aatagaggattatttatgtaatatttgggtgcgaatccagaagcagtctcagttgaaagaaaatggcagtcctcctcttgcaaagcttgcagagcaagag 53662100  T
Q  114 aaaattaggatgaactttatatctagacatgtaatttttcccacccgtgaaaatggcgtctcaacaagtgaagcaagttggttgagatttgaaaagaaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53662099 aaaattaggatgaactttatatctagacatgtaatttttcccacccgtgaaaacggcgtctcaacaagtgaagcaagttggttgagatttgaaaagaaaa 53662000  T
Q  214 ttgcatctggaccgttcagtgatttgtgagtagtatcatttcatctctttgatatgtttgtgggtaagtatatgttgaattactgatagctgac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53661999 ttgcatctggaccgttcagtgatttgtgagtagtatcatttcatctctttgatatgtttgtgggtaagtatatgttgaattactgatagctgac 53661906  T

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