View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_high_6 (Length: 231)
Name: NF10444_high_6
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21130905 - 21130689
Alignment:
| Q |
1 |
ctagtgcaaatcaacatagctatcatcttacattattgggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagat |
100 |
Q |
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| T |
21130905 |
ctagtgcaaatcaacatagctatcatcttacattattaggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagat |
21130806 |
T |
|
| Q |
101 |
tggaagaggtggaggaggagttgtatatagaggtacattgccagatcaaagagatgcagcaataaagagattgaatgaagctaaacaaggagaaggagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21130805 |
tggaagaggtggaggaggagttgtatatagaggtacattgccggatcaaagagatgcagcaataaagagattgaatgaagctaaacaaggagaaggagag |
21130706 |
T |
|
| Q |
201 |
tttcttgctgaagtaag |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
21130705 |
tttcttgctgaagtaag |
21130689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18659067 - 18658851
Alignment:
| Q |
1 |
ctagtgcaaatcaacatagctatcatcttacattattgggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagat |
100 |
Q |
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|||||| | ||||||||| |||||||| | ||||||||||||||||||||| | |||||||||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
18659067 |
ctagtggagatcaacataactatcatcatgtattattgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagat |
18658968 |
T |
|
| Q |
101 |
tggaagaggtggaggaggagttgtatatagaggtacattgccagatcaaagagatgcagcaataaagagattgaatgaagctaaacaaggagaaggagag |
200 |
Q |
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| T |
18658967 |
tggaagaggtggaggagggattgtatatagaggtacattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaa |
18658868 |
T |
|
| Q |
201 |
tttcttgctgaagtaag |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
18658867 |
tttcttgctgaagtaag |
18658851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 21111932 - 21111728
Alignment:
| Q |
14 |
acatagctatcatcttacattattgggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagattggaagaggtgga |
113 |
Q |
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||||| |||||||| | ||||||| |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
21111932 |
acataactatcatcatgcattatttggattcagaagatacagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtgga |
21111833 |
T |
|
| Q |
114 |
ggaggagttgtatatagaggtacattgccagatcaaagagatgcagcaataaagagattgaatgaagctaaacaaggagaaggagagtttcttgctgaag |
213 |
Q |
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||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
21111832 |
ggagggattgtatatagaggtacattgccagatgaaagacatgtagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgccgaag |
21111733 |
T |
|
| Q |
214 |
taagt |
218 |
Q |
| |
|
||||| |
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|
| T |
21111732 |
taagt |
21111728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 39131840 - 39132047
Alignment:
| Q |
10 |
atcaacatagctatcatcttacattattgggattcagaagatacacttactccgagttgaaggtagcgacaaaaaatttcagtaacgagattggaagagg |
109 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| || || || ||||||||||| |||||||||| ||| |
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| T |
39131840 |
atcaaaatagctatcatcatacattattgggattcagaagatacagttactcggagttgaaggtggcaaccaagaatttcagtaatgagattggaaaagg |
39131939 |
T |
|
| Q |
110 |
tggaggaggagttgtatatagaggtacattgccagatcaaagagatgcagcaataaagagattgaatgaagctaaacaaggagaaggagagtttcttgct |
209 |
Q |
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|||||||| |||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
39131940 |
cggaggaggggttgtatacctaggtacattgccggatcaaagacaagcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgct |
39132039 |
T |
|
| Q |
210 |
gaagtaag |
217 |
Q |
| |
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|||||||| |
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|
| T |
39132040 |
gaagtaag |
39132047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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