View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_10 (Length: 371)
Name: NF10444_low_10
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 35 - 367
Target Start/End: Original strand, 37990112 - 37990444
Alignment:
| Q |
35 |
ggaaactaaaccttgctgatgtggacttgtcacataacgcgtttgagggtgatgcgtccatgttttttaagtcggatatactcacttatacgataacatt |
134 |
Q |
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| T |
37990112 |
ggaaactgaaccttgctgatgtggacttgtcacataacgcgtttgagggtgatgcgtccatgttttttaagtcaaatatactcacttatacgataacatt |
37990211 |
T |
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| Q |
135 |
ggggagtaattcgtttgcttttgatatttccaaagttgggttatcgaaggatttgaataagttggatataaggcacaataaaatctatggtaagctacca |
234 |
Q |
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| T |
37990212 |
ggggagtaattcgtttgcttttgatatttcgaaagttgggttatcgaaggatttgaataagttggatataaggcacaataaaatatatggtaagctacca |
37990311 |
T |
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| Q |
235 |
gagagactctcggagctcaggtatctgcataagttgaacgtgagcgataataatttgtgtggtcagattccaatgaacacaaggtttgatgcgagttgtt |
334 |
Q |
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| T |
37990312 |
gagagactctcggagctcaggtatctgcataagttgaacgtgagcgataataatttgtgtggtcagattccaatgaacacaaggtttgatgcgagttgtt |
37990411 |
T |
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| Q |
335 |
atgttcttaataagtgcttctgtgctcctcctc |
367 |
Q |
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| T |
37990412 |
atgttcttaataagtgcttgtgtggttctcctc |
37990444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 37994403 - 37994512
Alignment:
| Q |
142 |
aattcgtttgcttttgatatttccaaagttgggttatcgaaggatttgaataagttggatataaggcacaataaaatctatggtaagctaccagagagac |
241 |
Q |
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| T |
37994403 |
aattcatttgcttttgattttgggaaagttgagttgccgaagaatttgggtaagttggatttgaggaacaataaaatctatggtacactaccggagggac |
37994502 |
T |
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| Q |
242 |
tctcggagct |
251 |
Q |
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| T |
37994503 |
taacggagct |
37994512 |
T |
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