View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_13 (Length: 354)
Name: NF10444_low_13
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 32087138 - 32087467
Alignment:
| Q |
1 |
gatgaacaataaaccttaaaatgtaagttgtaaatcaatcaatttgattaatcaagcatgtttacaatagaaagaactcaataacttgtaatatctcata |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32087138 |
gatgaacaataaaccttaaaatgtaagttctaaatcaatcaatttgattaatcaagcatgtttacaatagaaagaactcaataacttgtaatatctcata |
32087237 |
T |
|
| Q |
101 |
aaaaataatattgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaggtgatacacatttatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32087238 |
aaaaataatattgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaggtgatacacatttatat |
32087337 |
T |
|
| Q |
201 |
gattagtaagttaattggcaaataaattatggtatatatttaaatcatagattataagcaaataaaccatttacatgaaaccatatatcctcacattttc |
300 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32087338 |
gattagtaagttaattggc----aaattatgg--tatatttaaatcatagattataagcaaataaaccatttacatgaaaccatatatcctcacattttc |
32087431 |
T |
|
| Q |
301 |
ccttatcatttgcaattacttttccagctattcctt |
336 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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| T |
32087432 |
ccttatcatttgcaattactttttcagctattcctt |
32087467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 32074820 - 32075154
Alignment:
| Q |
1 |
gatgaacaataaaccttaaaatgtaagttgtaaatcaatcaatttgattaatcaagcatgtttacaatagaaagaactcaata----acttgtaatatct |
96 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
32074820 |
gatgaacaataaaccataaaatgttagttgtaaatcaatcaatttgattaat-aagcatgtttacaatagaaagaacttaatatataacttgtaatatct |
32074918 |
T |
|
| Q |
97 |
cataaaaaataata--ttgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaggtgatacacat |
194 |
Q |
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|| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32074919 |
caacaaaaaaaaaaatttgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaggtgatacacat |
32075018 |
T |
|
| Q |
195 |
ttatatgattagtaagttaattggcaaataaattatggtatatatttaaatcatagattataagcaaataaaccatttacatgaaaccatatatcctcac |
294 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32075019 |
ttatatggttagtaagttaattg----acaaattatgg--catatctaaataatagattataagcaaataaaccatttacatgaaaccatatatcctcac |
32075112 |
T |
|
| Q |
295 |
attttcccttatcatttgcaattacttttccagctattcctt |
336 |
Q |
| |
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|||||||| || ||||||||||||||||| |||||||||||| |
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| T |
32075113 |
attttcccataccatttgcaattactttttcagctattcctt |
32075154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 32104414 - 32104683
Alignment:
| Q |
1 |
gatgaacaataaaccttaaaatgtaagttgtaaatcaatcaatttgattaatcaagcatgtttacaatagaaagaactcaataacttgtaatatctcata |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| ||| |
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|
| T |
32104414 |
gatgaacattaaaccttaaaatgtaagttgtaattcaatcaatttgattaatcaagcatatttacaatagaaagaacttaataaattataatatcttata |
32104513 |
T |
|
| Q |
101 |
aa-aaataatattgattcaacttctaaaattacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaggtgatacacatttata |
199 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
32104514 |
aagaaataatattgattcaacttctaaaactacctgctcttggctttcaccaacaaagcacctgcataaccatcaagggaaaaagtgatacatatttata |
32104613 |
T |
|
| Q |
200 |
tgattagtaagttaattggcaaataaattatggtatatatttaaatcatagattataagcaaataaaccatttacatgaaaccatatat |
288 |
Q |
| |
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| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32104614 |
ttattac-----------------aaattatggcatat--ttaaatcatagattataagcaaataaaccatttacattgaaccatatat |
32104683 |
T |
|
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