View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_15 (Length: 289)
Name: NF10444_low_15
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 46641603 - 46641859
Alignment:
| Q |
21 |
cttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641603 |
cttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctta |
46641702 |
T |
|
| Q |
121 |
gtgtgtgtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641703 |
gtgtgtgtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgt |
46641802 |
T |
|
| Q |
221 |
ctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaaggtgttctc |
277 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641803 |
ctcctcagatttatatcagcctgtttttccaaagaatcaacatcacaaggtgttctc |
46641859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 46172825 - 46173080
Alignment:
| Q |
21 |
cttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctta |
120 |
Q |
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|||||||| || |||||||||||| |||||||||||||||||| |||| ||| || ||| |||| ||||||||| ||||||||||||| |||||| |
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| T |
46172825 |
cttcttgtactgcaactgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagccttgcggcaaggattgaaaagatcttt |
46172924 |
T |
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| Q |
121 |
gtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtg |
214 |
Q |
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| T |
46172925 |
gtgggtctggctgtctttctttttttgtttcttctgtacatgcaaatattcatttgctatacattccaatgctctaactgtcaacggtctgtttctagtg |
46173024 |
T |
|
| Q |
215 |
ctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaagg |
270 |
Q |
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|| |||||||| ||||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
46173025 |
ctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacatcacaagg |
46173080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 46630949 - 46630697
Alignment:
| Q |
30 |
ctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgt--- |
126 |
Q |
| |
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||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| || | |||||| ||||||||||| | |||||| || || |
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| T |
46630949 |
ctaaaactgcagtaccatgatctgaacaatgacgaggcagcattgttttgcctcttttacaatccttgcagcaaggattgagatgatcttgttgcgtctg |
46630850 |
T |
|
| Q |
127 |
---gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctc |
223 |
Q |
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|||| ||||||| || || || |||||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| |||||| |||| |||||| |
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| T |
46630849 |
gatgtctttccttttttgcctctttggcacatgcaagaattcatttgctatatattccaatgctctaactgtcaatggtctttttctattgctctgtctc |
46630750 |
T |
|
| Q |
224 |
ctcggatttatatcagcctgtttttccaaagaatcaacatcacaaggtgttct |
276 |
Q |
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|||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||| |
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| T |
46630749 |
ctcggatttatatcaggctgttgttccaacgaaccaacatcacaaggagttct |
46630697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 42 - 270
Target Start/End: Complemental strand, 46620440 - 46620206
Alignment:
| Q |
42 |
tcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgtgt------ctctcct |
135 |
Q |
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||||||||||||||||| |||| |||||||| ||| |||| |||| ||||||||| |||||||||||||||||||| |||||| | || || | |
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| T |
46620440 |
tcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctt |
46620341 |
T |
|
| Q |
136 |
tttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcggatttata |
235 |
Q |
| |
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||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| || | | |||||| |||| ||| |||||||||||||| ||| |
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| T |
46620340 |
tttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcata |
46620241 |
T |
|
| Q |
236 |
tcagcctgtttttccaaagaatcaacatcacaagg |
270 |
Q |
| |
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|||| ||||| |||||||||| ||||||||||||| |
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| T |
46620240 |
tcaggctgttgttccaaagaaccaacatcacaagg |
46620206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 46639179 - 46638924
Alignment:
| Q |
21 |
cttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctta |
120 |
Q |
| |
|
||||||| |||||| || | ||||||||||||||||| | | |||||||| ||| |||| |||| ||||||||| ||||||||||||||||||| |
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| T |
46639179 |
cttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcgacaaggattgaaaggatcttg |
46639080 |
T |
|
| Q |
121 |
gtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtg |
214 |
Q |
| |
|
|||||| |||| || |||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| || | | |||||| |||| | |
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| T |
46639079 |
gtgtgtctggatgtctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagag |
46638980 |
T |
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| Q |
215 |
ctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaagg |
270 |
Q |
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|| |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| |
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| T |
46638979 |
ctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacatcacaagg |
46638924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 15767973 - 15768216
Alignment:
| Q |
21 |
cttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctta |
120 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||| || |||| || ||| |||| ||||| ||| |||||||||||||||||||| |
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| T |
15767973 |
cttcttgtgctaaaactgaattaccatgatctgaacaatgatga------attgatttgccttttgtttgagcactgcagcaaggattgaaaggatcttc |
15768066 |
T |
|
| Q |
121 |
gtgtgt------gtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtg |
214 |
Q |
| |
|
||||| |||| || |||| ||||| |||| || |||| |||||||||| |||||||| |||||||||||||||| || ||||||||||||| |
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| T |
15768067 |
atgtgtctggatgtctttctttttttgtctcttttgtacgtgcaggtattcatttgctatacattctaatgctctaactgtcaacggtctgtttctagtg |
15768166 |
T |
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| Q |
215 |
ctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatc |
264 |
Q |
| |
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||||||| ||| ||||||||||||| ||||||||||||| || ||||||| |
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| T |
15768167 |
ctttgtcgcctaggatttatatcaggctgtttttccaaataaccaacatc |
15768216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 1537937 - 1537855
Alignment:
| Q |
37 |
tgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
119 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| |||||||| ||||| || ||| ||||| |||||||||||||||||||| |
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| T |
1537937 |
tgcattcccatgatcttaacaaagacgaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
1537855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 1537797 - 1537732
Alignment:
| Q |
204 |
tgtttctagtgctttgtctcctcggatttatatcagcctgtttttccaaagaatcaacatcacaag |
269 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||| || | ||||||||||||||||||||||| |
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| T |
1537797 |
tgtttctagtgatttgtctccagagatttatatcagcatgctgttccaaagaatcaacatcacaag |
1537732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 18373853 - 18373891
Alignment:
| Q |
21 |
cttcttgttctaaaactgcattcccatgatctgaacaat |
59 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||| |
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| T |
18373853 |
cttcttgtgctaaaactgcagtcccatgatctgaacaat |
18373891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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