View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_19 (Length: 256)
Name: NF10444_low_19
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_19 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 46642127 - 46641884
Alignment:
| Q |
13 |
agcacagaggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttcc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642127 |
agcacagaggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttcc |
46642028 |
T |
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| Q |
113 |
ttgtgttcaagttgagaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggt |
212 |
Q |
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| T |
46642027 |
ttgtgttcaagttcagaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggcgacggtagaggaaggt |
46641928 |
T |
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| Q |
213 |
gagcatggcctaaagacaaatgatccatgtctagcatctgctac |
256 |
Q |
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| T |
46641927 |
gagcatggcctaaagacaaatgatccatgtctagcatctgctac |
46641884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 46619952 - 46620172
Alignment:
| Q |
34 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
133 |
Q |
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| T |
46619952 |
cttcttcagcagacagaagtgtggaagaggataatggaaaaagcattatcaacgacagctatcaacacacgagtgtttcttgtgtcaaagttgaaaaatc |
46620051 |
T |
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| Q |
134 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
233 |
Q |
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| T |
46620052 |
tgaatctttcaccttcaacatacctcaggtaccatcgaattctgaaaatagcaaaacagtggcaatggcagctgaagatgagcaaggcctaacggcaaaa |
46620151 |
T |
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| Q |
234 |
gatccatgtctagcatctgct |
254 |
Q |
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| T |
46620152 |
aatccatgtctaacatatgct |
46620172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 46630436 - 46630548
Alignment:
| Q |
21 |
ggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttc |
120 |
Q |
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||||||| |||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||| || |||||| | ||| |||||| |||||||| |
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| T |
46630436 |
ggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgaaaaaaacattctcaatgatagttatcgatgcatgagtgtctcttgtgtta |
46630535 |
T |
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| Q |
121 |
aagttgagaaatg |
133 |
Q |
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| T |
46630536 |
aaattgagaaatg |
46630548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 46638670 - 46638890
Alignment:
| Q |
34 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
133 |
Q |
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|||||| |||| ||||||||||||||||| || | |||||||||| |||| || | |||||||||| ||||||| |||||||| ||||||| |||| |
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| T |
46638670 |
cttcttcagcagacagaagtgtggaagaggatgacagaaaaagcattatcaacaacagctatcaacgcacgagtgtttcttgtgttaaagttgaaaaatc |
46638769 |
T |
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| Q |
134 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
233 |
Q |
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|||| | ||||||||||| ||| ||| |||||||| |||| ||||| ||||||| | | | || || ||| |||||| ||||||||| |||| |
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| T |
46638770 |
tgaatctttcaccttcaacatacctcaggcaccatcgaagtctgaaaatagcaaaacagtagcaatggcagccgaaaatgagcaaggcctaaaggcaaaa |
46638869 |
T |
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| Q |
234 |
gatccatgtctagcatctgct |
254 |
Q |
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|||||||||||| |||||||| |
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| T |
46638870 |
gatccatgtctaacatctgct |
46638890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 18375648 - 18375536
Alignment:
| Q |
21 |
ggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttc |
120 |
Q |
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||||||| |||||||||| |||| |||||| |||||||||||||||| |||| | ||||| ||| ||| |||||| | ||| |||||| |||||||| |
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| T |
18375648 |
ggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataataaaaacaacattcacaatgacagttatcgatgcatgagtgtctcttgtgtta |
18375549 |
T |
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| Q |
121 |
aagttgagaaatg |
133 |
Q |
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|| |||||||||| |
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| T |
18375548 |
aaattgagaaatg |
18375536 |
T |
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