View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_21 (Length: 247)
Name: NF10444_low_21
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 41652814 - 41653043
Alignment:
| Q |
18 |
aagtcaataaaagtttactgttgaatgaaatataaaatatatcattttgtagtgttgtccacaaaaacatattatagcaattctccaactttaaaagagg |
117 |
Q |
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| T |
41652814 |
aagtcaataaaagtttactgttgaatgaaatataaaatatatcattttgttgtgttgtccacaaaaacatattatagcaattctccaactttaaaagggg |
41652913 |
T |
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| Q |
118 |
gaagtgagagggaaagagagtaattagtggactcatcattatggctaatgtttgaagtagtttattctgcagaaataacagatttcactacttttgcatc |
217 |
Q |
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| T |
41652914 |
gaagtgagagggaaagagagtaattagtggactcatcattatggctaatgtttgaagtagtttattctgcagaaataacagatttcactacttttgcatc |
41653013 |
T |
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| Q |
218 |
ttaatgacttcttgtgatttattgctagcc |
247 |
Q |
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| T |
41653014 |
ttaatgacttcttgtgatttattgctagcc |
41653043 |
T |
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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 22880007 - 22880074
Alignment:
| Q |
38 |
ttgaatgaaatataaaatatatcattttgtagtgttgtccacaaaaacatattatagcaattctccaa |
105 |
Q |
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| T |
22880007 |
ttgaatgaaatataaagtatatcattttgtagtgttggccataagaacatattatagcaattctccaa |
22880074 |
T |
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