View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_24 (Length: 230)
Name: NF10444_low_24
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 53039207 - 53039436
Alignment:
| Q |
1 |
aaacttcacctgtatacattaattaatgactaacctatccagacaccacggttcacactcaaaatatattgtatagttacagtatcacgatccatacact |
100 |
Q |
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| T |
53039207 |
aaacttcacctgtatacattaattaatgactaacctatccagacaccacggctcacactcaaaatatattgtatagttacagtatcacgatccatacact |
53039306 |
T |
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| Q |
101 |
aataatacgtgatgataaggaaatgaataaagccataaaacttaaatccgcatcgcaacttcttttgagtggaattgaatatggagaagctacatactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039307 |
aataatacgtgatgataaggaaatgaataaagccataaaacttaaatccgcgtcgcaacttcttttgagtggaattgaatatggagaagctacatactat |
53039406 |
T |
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| Q |
201 |
agtttaggagaaggattgaagggctgaaga |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
53039407 |
agtttaggagaaggattgaagggccgaaga |
53039436 |
T |
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