View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10444_low_25 (Length: 230)
Name: NF10444_low_25
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10444_low_25 |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 3617465 - 3617240
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgattgtagaagatgaaatgtgtgtt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3617465 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagatattacatggtcagatgcttgattgtagaagatgaaatgtgtgtt |
3617366 |
T |
|
| Q |
107 |
tgtgttgtaatcattatgtgatagtgtgtactgttatttcttatcttatgtgtattatgtaattgttattaccaatgatcattctattgtaaattaagaa |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3617365 |
tgtgctgtaatcattatgtgatagtgtgtactgttatttcttatcttatgcgtattatgtaaatgttattaccaatgatcattctattgtaaattaagaa |
3617266 |
T |
|
| Q |
207 |
aattcaatac--atatcccatggttt |
230 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
3617265 |
aattcaatacatatatcccatggttt |
3617240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 29058156 - 29057943
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgattgtagaagatgaaa----tgtgtg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29058156 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgattgtagaagatgaaatatgtgtgtt |
29058057 |
T |
|
| Q |
105 |
tttgtgttgtaatcattatgtgatagtgtgtactgttatttcttatcttatgtgtattatgtaattgttattaccaatgatcattctattgtaaattaag |
204 |
Q |
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||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| |||| |||||| |||||||||| |||||||||||| |
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| T |
29058056 |
tttgtgttgtaataattatgtgatattgtgtacttttatttctcatcttatgtgtattatgtaaatgttgttaccagtgatcattctgttgtaaattaag |
29057957 |
T |
|
| Q |
205 |
aaaattcaatacat |
218 |
Q |
| |
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|||||||||||||| |
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| T |
29057956 |
aaaattcaatacat |
29057943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 29071384 - 29071173
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgattgtagaagatgaaatgtg--tgtt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
29071384 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgattgtagaagatgaaatgtgtctttt |
29071285 |
T |
|
| Q |
107 |
tgtgttgtaatcattatgtgatagtgtgtactgttatttcttatcttatgtgtattatgtaattgttattaccaatgatcattctattgtaaattaagaa |
206 |
Q |
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|||| |||||| |||||||||||||||||| |||||||| |||||||||| ||||||||| | || ||||| |||||||||| |||||||||||||| |
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| T |
29071284 |
tgtgctgtaatatttatgtgatagtgtgtacatttatttctcatcttatgtggattatgtaaatattgctaccagtgatcattctgttgtaaattaagaa |
29071185 |
T |
|
| Q |
207 |
aattcaatacat |
218 |
Q |
| |
|
| || ||||||| |
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| T |
29071184 |
agttaaatacat |
29071173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 28956990 - 28957065
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28956990 |
aaggctgtgtgggaagctttaggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
28957065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 29073260 - 29073337
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
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| T |
29073260 |
ctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtccgatgcttgat |
29073337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 29102223 - 29102300
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
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| T |
29102223 |
ctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
29102300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 29116368 - 29116445
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
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| T |
29116368 |
ctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
29116445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 29078114 - 29078043
Alignment:
| Q |
12 |
gctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttga |
83 |
Q |
| |
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|||||||||||||| || ||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
29078114 |
gctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggccttgacattacatggtcagatgcttga |
29078043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 29068922 - 29068847
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
||||||||||||||||| || ||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
29068922 |
aaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgat |
29068847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 29110865 - 29110793
Alignment:
| Q |
12 |
gctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
|||||||||||||| || ||||||||| |||| ||||||||||| || || |||||||||||||||||||||| |
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| T |
29110865 |
gctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggtcttgatattacatggtcagatgcttgat |
29110793 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 3619186 - 3619263
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||| |||||||||||||| | || ||||||||||| |||||||||| |
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| T |
3619186 |
ctaaagctgtgtggaaagccttggatgttcctcatgatcaatggggtggattggatattacatggtctgatgcttgat |
3619263 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 11851788 - 11851999
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgattgtagaagatgaaatgtg--tgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | || |
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| T |
11851788 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgattgtagaagatgtaatgtgtctttt |
11851887 |
T |
|
| Q |
107 |
tgtgttgtaatcattatgtgatagtgtgtactgttatttcttatcttatgtgtattatgtaattgttattaccaatgatcattctattgtaaattaagaa |
206 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||| |||||||||| ||||||||| | || ||||| |||||||||| |||||||||||||| |
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|
| T |
11851888 |
tgtgctgtaatatttatgtgatagtgtgtacatttatttctcatcttatgtggattatgtaaatattgctaccagtgatcattctgttgtaaattaagaa |
11851987 |
T |
|
| Q |
207 |
aattcaatacat |
218 |
Q |
| |
|
| || ||||||| |
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|
| T |
11851988 |
agttaaatacat |
11851999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 11849908 - 11849831
Alignment:
| Q |
7 |
ctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
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| T |
11849908 |
ctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
11849831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 11854502 - 11854577
Alignment:
| Q |
9 |
aaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagacattacatggtcagatgcttgat |
84 |
Q |
| |
|
||||||||||||||||| || ||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11854502 |
aaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgat |
11854577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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