View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10444_low_27 (Length: 226)

Name: NF10444_low_27
Description: NF10444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10444_low_27
NF10444_low_27
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-226)||(119454-119588)
[»] chr5 (5 HSPs)
chr5 (71-218)||(15912794-15912941)
chr5 (92-226)||(39056132-39056266)
chr5 (71-226)||(7183389-7183544)
chr5 (92-218)||(33869039-33869165)
chr5 (1-37)||(7183573-7183609)
[»] chr7 (2 HSPs)
chr7 (92-226)||(45402550-45402684)
chr7 (92-218)||(6797066-6797192)
[»] chr3 (1 HSPs)
chr3 (92-226)||(32233243-32233377)
[»] scaffold0717 (1 HSPs)
scaffold0717 (92-226)||(7022-7156)
[»] scaffold0006 (1 HSPs)
scaffold0006 (92-226)||(209578-209712)
[»] chr1 (3 HSPs)
chr1 (92-226)||(13590719-13590853)
chr1 (92-226)||(20372449-20372583)
chr1 (141-226)||(20481345-20481430)
[»] scaffold0069 (1 HSPs)
scaffold0069 (92-226)||(51611-51745)
[»] chr4 (2 HSPs)
chr4 (92-226)||(2847790-2847924)
chr4 (160-226)||(20587992-20588058)
[»] chr6 (2 HSPs)
chr6 (92-225)||(7851589-7851722)
chr6 (181-226)||(18762395-18762440)
[»] scaffold0460 (2 HSPs)
scaffold0460 (92-226)||(1856-1990)
scaffold0460 (92-134)||(2004-2046)
[»] scaffold0065 (1 HSPs)
scaffold0065 (185-226)||(847-888)
[»] scaffold0002 (1 HSPs)
scaffold0002 (181-226)||(450453-450498)


Alignment Details
Target: scaffold0012 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 119588 - 119454
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
119588 ggaacactcaacagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 119489  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
119488 aaacttcagggtatggattactgaaaccataagta 119454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 15912794 - 15912941
Alignment:
71 tactttgattcagtggtgattggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaa 170  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
15912794 tactttgatttagtggtgattggaacactcaacagcaacaacacaccacatcaattttcattttccatcgtcgtcatacaatacatttgatttgcagaaa 15912893  T
171 gggttgttgctgaattgaaacagacttcagggtatggattactgaaac 218  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
15912894 gggttgttgctgaattgaaacaaacttcagggtgtggattactgaaac 15912941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 39056132 - 39056266
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39056132 ggaacactcagcagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 39056231  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
39056232 aaacttcagggtatggattactgaaaccataagta 39056266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 7183544 - 7183389
Alignment:
71 tactttgattcagtggtgattggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaa 170  Q
    |||||||||||| || |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||    
7183544 tactttgattcattgatgattggaacactcaacaacaacaacacaccacatcaattttcattttccatcgtcgtcttacgatacacttgatttgcaaaaa 7183445  T
171 gggttgttgctgaattgaaacagacttcagggtatggattactgaaactataagta 226  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||    
7183444 gggttgttgctgaattgaaacaaacttcagggtgtggattactgaaaccataagta 7183389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 33869165 - 33869039
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
33869165 ggaacactcaacaacaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgttttgcaaaaagggttgttgctgaattgaaac 33869066  T
192 agacttcagggtatggattactgaaac 218  Q
    | |||||||||||||||||||||||||    
33869065 aaacttcagggtatggattactgaaac 33869039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7183609 - 7183573
Alignment:
1 gattcagatctgatatgagttgtgtaactcaattgcc 37  Q
    ||||||||| ||||| |||||||||||||||||||||    
7183609 gattcagatatgatacgagttgtgtaactcaattgcc 7183573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 45402550 - 45402684
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45402550 ggaacactcaacaacaacaacacaccacatcaattttcattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 45402649  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
45402650 aaacttcagggtatggattactgaaaccataagta 45402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 6797066 - 6797192
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
6797066 ggaacactcaacagcaacaacacaccacatcaatttccatttttcatcgtcgtcatacaatacacttgatttgcataaagggttgttgctgaattgaaac 6797165  T
192 agacttcagggtatggattactgaaac 218  Q
    | |||||||||||||||||||||||||    
6797166 aaacttcagggtatggattactgaaac 6797192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 32233377 - 32233243
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
32233377 ggaacactcaacagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagtaagggttgttgctgaattgaaac 32233278  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | |||||| |||||||||||||||||| |||||||    
32233277 aaacttcatggtatggattactgaaaccataagta 32233243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 7022 - 7156
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
7022 ggaacactcaacaacaacaacacaccacatcaatttccattttccattgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaagc 7121  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||| ||||||||||| |||||||    
7122 aaacttcagggtatgaattactgaaaccataagta 7156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 209712 - 209578
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
209712 ggaacaatcaacagcaacaacacaccacatcaattttcattttccatcgtcgtcatacgatacacttaatttgcagaaaggattgttgctgaattgaaac 209613  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
209612 aaacttcagggtatggattactgaaaccataagta 209578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 13590853 - 13590719
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||    
13590853 ggaacactcaacagcaacaacaaaccacatcaatttccattttccatcgttgtcatacaatacacttgatttgcagaaagggttgttggtgaattgaaac 13590754  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
13590753 aaacttcagggtatggattactgaaaccataagta 13590719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 20372583 - 20372449
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
20372583 ggaacactcaatagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaat 20372484  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | |||||| | ||| |||||| ||||| |||||||    
20372483 aaacttcaagatattgattaccgaaaccataagta 20372449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 20481430 - 20481345
Alignment:
141 tcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaacagacttcagggtatggattactgaaactataagta 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||    
20481430 tcgtcatgcgatacacttgatttgcagaaagggttgttgctgaattgaaacaaacttcaaggtatggattactgaaaccataagta 20481345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 51745 - 51611
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
51745 ggaacactcaatagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaat 51646  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | |||||| | ||| |||||| ||||| |||||||    
51645 aaacttcaagatattgattaccgaaaccataagta 51611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 2847790 - 2847924
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||| ||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
2847790 ggaacactcaacaacaataacacaccacatcaatttctattttccatcatcgtcatacgatacacttgatttgcataaagggttgttgttgaattgaaac 2847889  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | ||||||||||||||||||||||||| |||||||    
2847890 aaacttcagggtatggattactgaaaccataagta 2847924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 20587992 - 20588058
Alignment:
160 atttgcagaaagggttgttgctgaattgaaacagacttcagggtatggattactgaaactataagta 226  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
20587992 atttgcagaaagggttgttgctgaattgaaacaaacttcagggtatggattactgaaaccataagta 20588058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 7851722 - 7851589
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||    
7851722 ggaacactcaacagtaacaacacaccacatcaatttccattttccatcgtggtcatacgatacatttgatttgcagaaagggttgttgatgaattgatac 7851623  T
192 agacttcagggtatggattactgaaactataagt 225  Q
    | |||||||||||||||| |||||||| ||||||    
7851622 aaacttcagggtatggataactgaaaccataagt 7851589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 18762395 - 18762440
Alignment:
181 tgaattgaaacagacttcagggtatggattactgaaactataagta 226  Q
    |||||||||||| ||||  ||||||||||||||||||| |||||||    
18762395 tgaattgaaacaaacttaggggtatggattactgaaacaataagta 18762440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 1990 - 1856
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac 191  Q
    ||||||||||||||||||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
1990 ggaacactcaacagcaacaacacaacacatcaattttcatttttcatcgtcttcatacgatacacttgatttgcataaagagttgttgctgaattgaaac 1891  T
192 agacttcagggtatggattactgaaactataagta 226  Q
    | |||||| |||||||||||||||||| |||||||    
1890 aaacttcaaggtatggattactgaaaccataagta 1856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 2046 - 2004
Alignment:
92 ggaacactcaacagcaacaacgcaccacatcaatttccatttt 134  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
2046 ggaacactcaacagcaacaacacaccacatcaatttccatttt 2004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 888 - 847
Alignment:
185 ttgaaacagacttcagggtatggattactgaaactataagta 226  Q
    |||||||| |||| |||||||||||||||||||| |||||||    
888 ttgaaacaaacttaagggtatggattactgaaaccataagta 847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 450498 - 450453
Alignment:
181 tgaattgaaacagacttcagggtatggattactgaaactataagta 226  Q
    |||||||||||| ||||||||||||| ||||||||||  |||||||    
450498 tgaattgaaacaaacttcagggtatgaattactgaaatcataagta 450453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University